Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0508700-03
CDS Infomation	cds chromosome:IRGSP-1.0:5:25181357:25186706:1 gene:Os05g0508700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:single domain MDC protein 4, single MATH domain containing protein 4 description:TRAF-type domain containing protein. (Os05t0508700-01);Similar to Math domain containing protein (Fragment). (Os05t0508700-02);Hypothetical conserved gene. (Os05t0508700-03)
Sequence	ATGAAGGATGGTGCTTCTGGTGAGGTTAACAAAATTTCCATGGAGCGCGAGGAAAGACGC CTAACTGAGCTTGGTCGGAAGATACTTGAAACATTTGTGCTATCTCATATATTCAGTGGA ATTGAAGTTGCGTACCAAGAAGCTGTTGCTTTGAAGAGACAAGAAGAGTTAATTCGAGAG GAGGAGGAAGAGGCATGGCTTCTTGGAAATGAGATGAAGGGGAAGCGTGGGGGTGGTGCT AATGAAAAAGATAAGCGTGCAAAGAAGAAACAGGCCAAACAAAAGAAGAACAATCGTAAG ATTAAAGACAAGGAAAGAGACGAAAAATTTGAAGCAAAGATTCTGGAAAGACTTCATGAT GAAACTGCGATTGATGATAGTGATGGCTTATCATCAAAGCAGGCCGAAGAAGTGACAACA AAGGTTGAAAACTTGGAAGAAGGTGCTTCAGATAGGCAAGGTGATCTAGATAGTTCAGAA ATTGCTCACCGACCAGACTCAGGTGACAAGTATCCTAGACAAATGAATGGACTGAGTGAT GTTACTGGCAATGCACAAAAGGTAAAGAAGGCCTCCTCTATGGAGGCTAACTCACCAGTC TTTCTGGCTGATTCTGTTGCTGCAAGCGGCACTCATAGCAGAGGAAATAATTTGTCAGAC AGTAAGAACCGCATGACACCAAATAAAGATCATGTTCCAAAACCAACATTGCAAGCCAAT AGAGCATCTGCTAATTGCTCGAAATCAACTCCAGTTGATATGGAGAAAGATGTTCCTCTT CCTTCAAGATCGCCACAAATTAATAAACCTGCTCCAGTTCCTCCAAAATCTCCACAAGTT GGTAATGCTACTCCAGTTCCTCCAAAATCTCCACCAATTGAAAAAGCTTGTCCAGTTCCC CCCAAATCACCACCAAGTGCTAAAGATACATCCCTTCCTTCAGTGAGATCACTTCAAATT GATAAACCTGTCCCAGTCCCTCCAAGATTACCCCAAGTTGATAAAGCTGCTTCACTTTCT TCAGAATTGCCACAAACTTCTACCACTTCTAATTCTGAAGCTCAAGAAGAGACTGCTGCC ATAAGGGTTGCATCTCCCTCAGTTTCTGAAGTTACTGTCACAGCATCAAGACCTTCGAGT GCCCCTGTGTTCCCTGCCCCAAGATCAACTGTACCAGCTACACAAGTACAAGTTTCCACA TTGCTTTCGCGCTCAATGAGTGAAGCAACTCGAAGATCAGGAAATGATCCTTCCCCTTCT GCACCAGCTTACATTCCACAAACCTACCGTAACGCTATCATCGGTAAGCATGGGCGGGGT ACAACCTCAGGAACTACTGCATATCAGTCAACCTCTCTGGGCCAAGGTACTGCCCTTTCA CAGCCATTGTCGACATATGCACCAACTATGTCAGTGACGATGCCTCCTGCTGGAAGGAAT GATCAGTTTTCTGGTAGGCATGGATTGGAGTCTGGGTTGGGAAAGCCAGAAGCACGTGAT AGCTGGCAACCATGGAATGCTAACAGGCATGTTGACAAACATCTCTGGAGGGATGACTCG ACATACCAACAAACAACCAACGGTCATGCATATCCGCAACCTTGGAAGGATGTTAATTTT CTTCAAGCAAGGGGCACAGAAACAGAAATACCCAGCAGGTTTGGAGGACCGCAACTACCT AGGCAGTTCCAAGCTGAGACTCATGCGGATTATCTCTTGCAACAACCACAGGGGCCAGTG GCAGAAGAATTTCCGCACCTTGACATCATAAACGATTTGCTTGAGGAGGAACAGAGCAAT GGCAGTATGCCAGAGTCCATTGGTCATGATTACCATACATTTGGTCTGCCGTTGCCGTTT TTGTTAAGAGGCAATTTGGCAGATCAGGAAATGGCTTCTGCTAGCAGTCCTGGGCGGTTT AATTTGACTGAGCCATATTACGACGAGGGATACTCAAGGGCCTATGACATGAGTGCTTTC CAGGGGACAAGGGAAAGACAATTTCCCTCCTTGGATGCCTATTCTAATGGCCTGTCTGAC ATGAGTCCATCAAAGCCTTGGCTGAATGGCTCTCCTAATCCATCGATGAACCATGCAGTT GGTACAAATGGATACCCCCAGCAAATACCGGACTACACCAATTTGGCTAGTGAGTTGAAT GGAGCCTCTCTATACCATCGCCGCTACGCCAACGGTCGCTGGTAA

Peptide Sequence

PEP ID	Os05t0508700-03
PEP Infomation	pep chromosome:IRGSP-1.0:5:25181357:25186706:1 gene:Os05g0508700 transcript:Os05t0508700-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:single domain MDC protein 4, single MATH domain containing protein 4 description:TRAF-type domain containing protein. (Os05t0508700-01);Similar to Math domain containing protein (Fragment). (Os05t0508700-02);Hypothetical conserved gene. (Os05t0508700-03)
Sequence	MKDGASGEVNKISMEREERRLTELGRKILETFVLSHIFSGIEVAYQEAVALKRQEELIRE EEEEAWLLGNEMKGKRGGGANEKDKRAKKKQAKQKKNNRKIKDKERDEKFEAKILERLHD ETAIDDSDGLSSKQAEEVTTKVENLEEGASDRQGDLDSSEIAHRPDSGDKYPRQMNGLSD VTGNAQKVKKASSMEANSPVFLADSVAASGTHSRGNNLSDSKNRMTPNKDHVPKPTLQAN RASANCSKSTPVDMEKDVPLPSRSPQINKPAPVPPKSPQVGNATPVPPKSPPIEKACPVP PKSPPSAKDTSLPSVRSLQIDKPVPVPPRLPQVDKAASLSSELPQTSTTSNSEAQEETAA IRVASPSVSEVTVTASRPSSAPVFPAPRSTVPATQVQVSTLLSRSMSEATRRSGNDPSPS APAYIPQTYRNAIIGKHGRGTTSGTTAYQSTSLGQGTALSQPLSTYAPTMSVTMPPAGRN DQFSGRHGLESGLGKPEARDSWQPWNANRHVDKHLWRDDSTYQQTTNGHAYPQPWKDVNF LQARGTETEIPSRFGGPQLPRQFQAETHADYLLQQPQGPVAEEFPHLDIINDLLEEEQSN GSMPESIGHDYHTFGLPLPFLLRGNLADQEMASASSPGRFNLTEPYYDEGYSRAYDMSAF QGTRERQFPSLDAYSNGLSDMSPSKPWLNGSPNPSMNHAVGTNGYPQQIPDYTNLASELN GASLYHRRYANGRW

Transcript Sequence

Transcript ID	Os05t0508700-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25181357:25186706:1 gene:Os05g0508700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:single domain MDC protein 4, single MATH domain containing protein 4 description:TRAF-type domain containing protein. (Os05t0508700-01);Similar to Math domain containing protein (Fragment). (Os05t0508700-02);Hypothetical conserved gene. (Os05t0508700-03)
Sequence	TGCTTGAGAGAGCAGCCTTAGAACCACTGCCTTGTCAACCTGTGTCTCCAAAGGATGACA AATGTTCCCAGAGTCGCATGAAGGATGGTGCTTCTGGTGAGGTTAACAAAATTTCCATGG AGCGCGAGGAAAGACGCCTAACTGAGCTTGGTCGGAAGATACTTGAAACATTTGTGCTAT CTCATATATTCAGTGGAATTGAAGTTGCGTACCAAGAAGCTGTTGCTTTGAAGAGACAAG AAGAGTTAATTCGAGAGGAGGAGGAAGAGGCATGGCTTCTTGGAAATGAGATGAAGGGGA AGCGTGGGGGTGGTGCTAATGAAAAAGATAAGCGTGCAAAGAAGAAACAGGCCAAACAAA AGAAGAACAATCGTAAGATTAAAGACAAGGAAAGAGACGAAAAATTTGAAGCAAAGATTC TGGAAAGACTTCATGATGAAACTGCGATTGATGATAGTGATGGCTTATCATCAAAGCAGG CCGAAGAAGTGACAACAAAGGTTGAAAACTTGGAAGAAGGTGCTTCAGATAGGCAAGGTG ATCTAGATAGTTCAGAAATTGCTCACCGACCAGACTCAGGTGACAAGTATCCTAGACAAA TGAATGGACTGAGTGATGTTACTGGCAATGCACAAAAGGTAAAGAAGGCCTCCTCTATGG AGGCTAACTCACCAGTCTTTCTGGCTGATTCTGTTGCTGCAAGCGGCACTCATAGCAGAG GAAATAATTTGTCAGACAGTAAGAACCGCATGACACCAAATAAAGATCATGTTCCAAAAC CAACATTGCAAGCCAATAGAGCATCTGCTAATTGCTCGAAATCAACTCCAGTTGATATGG AGAAAGATGTTCCTCTTCCTTCAAGATCGCCACAAATTAATAAACCTGCTCCAGTTCCTC CAAAATCTCCACAAGTTGGTAATGCTACTCCAGTTCCTCCAAAATCTCCACCAATTGAAA AAGCTTGTCCAGTTCCCCCCAAATCACCACCAAGTGCTAAAGATACATCCCTTCCTTCAG TGAGATCACTTCAAATTGATAAACCTGTCCCAGTCCCTCCAAGATTACCCCAAGTTGATA AAGCTGCTTCACTTTCTTCAGAATTGCCACAAACTTCTACCACTTCTAATTCTGAAGCTC AAGAAGAGACTGCTGCCATAAGGGTTGCATCTCCCTCAGTTTCTGAAGTTACTGTCACAG CATCAAGACCTTCGAGTGCCCCTGTGTTCCCTGCCCCAAGATCAACTGTACCAGCTACAC AAGTACAAGTTTCCACATTGCTTTCGCGCTCAATGAGTGAAGCAACTCGAAGATCAGGAA ATGATCCTTCCCCTTCTGCACCAGCTTACATTCCACAAACCTACCGTAACGCTATCATCG GTAAGCATGGGCGGGGTACAACCTCAGGAACTACTGCATATCAGTCAACCTCTCTGGGCC AAGGTACTGCCCTTTCACAGCCATTGTCGACATATGCACCAACTATGTCAGTGACGATGC CTCCTGCTGGAAGGAATGATCAGTTTTCTGGTAGGCATGGATTGGAGTCTGGGTTGGGAA AGCCAGAAGCACGTGATAGCTGGCAACCATGGAATGCTAACAGGCATGTTGACAAACATC TCTGGAGGGATGACTCGACATACCAACAAACAACCAACGGTCATGCATATCCGCAACCTT GGAAGGATGTTAATTTTCTTCAAGCAAGGGGCACAGAAACAGAAATACCCAGCAGGTTTG GAGGACCGCAACTACCTAGGCAGTTCCAAGCTGAGACTCATGCGGATTATCTCTTGCAAC AACCACAGGGGCCAGTGGCAGAAGAATTTCCGCACCTTGACATCATAAACGATTTGCTTG AGGAGGAACAGAGCAATGGCAGTATGCCAGAGTCCATTGGTCATGATTACCATACATTTG GTCTGCCGTTGCCGTTTTTGTTAAGAGGCAATTTGGCAGATCAGGAAATGGCTTCTGCTA GCAGTCCTGGGCGGTTTAATTTGACTGAGCCATATTACGACGAGGGATACTCAAGGGCCT ATGACATGAGTGCTTTCCAGGGGACAAGGGAAAGACAATTTCCCTCCTTGGATGCCTATT CTAATGGCCTGTCTGACATGAGTCCATCAAAGCCTTGGCTGAATGGCTCTCCTAATCCAT CGATGAACCATGCAGTTGGTACAAATGGATACCCCCAGCAAATACCGGACTACACCAATT TGGCTAGTGAGTTGAATGGAGCCTCTCTATACCATCGCCGCTACGCCAACGGTCGCTGGT AACGTGATGACGCCTGTATACAGTCTTGCAATCAAAAAAAATAATGCTTGTTACCTGTAA TAGATGTTCAGTCTGGGTCTGAGCCGTGTCATGGCCTGTAATTCCAAACTTTTAATTCCA AAAGGGCAAAGGGTTGCATTCTGTAAAGCGTTCGCCGTGTTTAGGCTGGTTAATGCTAAG TCGAGTGCTTTTCTGATC