Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0502000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:24711970:24716664:1 gene:Os05g0502000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 9 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os05t0502000-01)
Sequence	ATGTCAGGCGAGCTCTCCACGCGCGCGTCGACCTCCTCGTCGAGCAGCTCCCCTCCCGGC GACGCGCGGGGGCCGGAACATGGAGGGACGCCGCGTGGCGAGGTGTCGTCCAAGCGCCGT CTGGTGCTGCGGCGGCGGCAGCGGTGGCGGCGTCTCGGCGGCGGCGCCGCGGCGTCGTGG GCGGCGGCGGACCCGCGGGCGAGGTGGGTCAGGGAGTGGAACCGCGCGTACCTGCTGGCC TGCGCGGCGGGGCTCATGGTGGACCCGCTGTTCCTGTACGCCGTGTCGCTGAGCGGGCCG CTCATGTGCGTCTTCCTCGACGGCTGGCTCGCCGCCGCGGTCACCGCGCTCCGGTGCATG GTGGACGCCATGCACGCGTGGAACATCGTGACGCAGCTCCGCGTCTCGCGCGCCGGGCGG GAGCGGGCGTGCGCCGCCGGCCCCGACGAGGAGCAGCCTGAGGCTGAGGCCGCGGCGCCG GCGCCGGCGGCGGACGCGGACGCCGCCGCGAGCAACAAGCTCCGTGACCACGGGAGGTAC AGGAAATGGTTGGTGCTGGATTTCTTCGTCATTCTCCCCGTGATGCAGGTGGTGGTTTGG GTGGCGGCGCCGGCGATGATACGGGCGGGGTCGACGACGGCGGTGATGACGGTGATGCTG GTGGCGTTCATGTTGGAGTACCTGCCAAAGATCTACCACTCCGTCGTCTTCCTCCGCCGG ATGCAGAACCAGTCCGGCCACATCTTCGGCACCATCTGGTGGGGCATCGCCCTCAACCTC ATAGCCTACTTCGTCGCCGCTCACGCGGTGGGCGCGTGCTGGTACTTGCTGGGGGTCCAG AGGGCCACCAAGTGCCTGAAGGAGCAGTGCTTGCTTGCCGGGCTGCCGGCGTGCGCGTCG TCCACGGCGGCGGTGGCGTGCGTCGACCCGCTGTACTACGGCGCCGCCGTGGCGTCCGTC GGCGGCGACCGGCTCGCCTGGGGCGGGAACGCGACGGCCAGGAACGTGTGCCTCAGCAGC GGCGACAACTACCAGTATGGCGCGTACAAGTGGACCGTCATGCTCGTCTCCAACCCCAGC CGCCTCGAGAAGATGCTCCTCCCCATCTTCTGGGGCCTCATGACCCTCAGCACGTTTGGG AATCTGGAGAGCACGACGGAGTGGGTGGAGATCGTGTTCAACATAATGACGATCACGGGG GGCCTGATCCTGGTGACGATGCTGATCGGGAACATCAAGGTGTTCCTGAACGCGACGACG TCGAAGAAGCAGGCGATGCAGACGCGGCTGCGCGGGCTGGAGTGGTGGATGGAGCACAAG GGGGTGCCGCACGGGTTCCGGCAGCGGGTGCGGCAGTTCGAGCGGCAGCGGTGGGCGGCG ACGCGCGGGGTGGACGAGTGCCAGATCGTCCGCGACCTCCCCGAGGGCCTCCGCCGCGAC ATCAAGTACCACCTCTGCCTCGACCTCGTCCGCCAGGTCCCCCTCTTCCACCACATGGAC GACCTCGTCCTCGAGAACATCTGCGACCGCGTCAAGTCCCTCATCTTCCCCAAGGGCGAG ATCATTGTGAGAGAAGGGGACCCGGTGCAGAGGATGCTGTTCATAGTGAGGGGGCACCTG CAGTGCAGCCAGGTGATGAGGAACGGGGCGACGAGCTGGTGCACGCTGGGGCCGGGGAAC TTCAGCGGGGACGAGCTGCTGTCGTGGTGCATGAGGCGGCCGTTCATGGAGCGGCTGCCG GCGTCGTCGTCGACGCTGGTGACGGCGGAGAGCACGGAGGCGTTCGGGCTGGAGGCCGGC GACGTCAAGTACGTGACGCAGCACTTCCGGTACACCTTCACCAGCGACAAGGTGCGGCGC AGCGCGCGGTACTACTCCCACGGGTGGCGGACGTGGGCGGCCGTCGCCGTGCAGCTCGCG TGGCGGCGGTACAAGCACCGCAAGACGCTCGCCTCGCTCTCCTTCATCCGCCCGCGCAGG CCGCTCTCGCGGTGCTCGTCCCTCGGGGAGGAGAAGCTCAGGCTCTACACCGCCATCCTC ACCTCCCCCAAGCCCAACCAGGACGACGACTTCTAA

Peptide Sequence

PEP ID	Os05t0502000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:24711970:24716664:1 gene:Os05g0502000 transcript:Os05t0502000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 9 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os05t0502000-01)
Sequence	MSGELSTRASTSSSSSSPPGDARGPEHGGTPRGEVSSKRRLVLRRRQRWRRLGGGAAASW AAADPRARWVREWNRAYLLACAAGLMVDPLFLYAVSLSGPLMCVFLDGWLAAAVTALRCM VDAMHAWNIVTQLRVSRAGRERACAAGPDEEQPEAEAAAPAPAADADAAASNKLRDHGRY RKWLVLDFFVILPVMQVVVWVAAPAMIRAGSTTAVMTVMLVAFMLEYLPKIYHSVVFLRR MQNQSGHIFGTIWWGIALNLIAYFVAAHAVGACWYLLGVQRATKCLKEQCLLAGLPACAS STAAVACVDPLYYGAAVASVGGDRLAWGGNATARNVCLSSGDNYQYGAYKWTVMLVSNPS RLEKMLLPIFWGLMTLSTFGNLESTTEWVEIVFNIMTITGGLILVTMLIGNIKVFLNATT SKKQAMQTRLRGLEWWMEHKGVPHGFRQRVRQFERQRWAATRGVDECQIVRDLPEGLRRD IKYHLCLDLVRQVPLFHHMDDLVLENICDRVKSLIFPKGEIIVREGDPVQRMLFIVRGHL QCSQVMRNGATSWCTLGPGNFSGDELLSWCMRRPFMERLPASSSTLVTAESTEAFGLEAG DVKYVTQHFRYTFTSDKVRRSARYYSHGWRTWAAVAVQLAWRRYKHRKTLASLSFIRPRR PLSRCSSLGEEKLRLYTAILTSPKPNQDDDF

Transcript Sequence

Transcript ID	Os05t0502000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:24711970:24716664:1 gene:Os05g0502000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 9 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os05t0502000-01)
Sequence	GAGGCACCAATTGCTGTTGTACAACGAAGCTATCCATCTACCTGGCGAGAGCCGTTCGCT TCCACATGCTCGTGCCCCTCCGGTGGTGCTCGATCGACGGGCTCGCCGCCGCCGTAGCTG CACGCCGCCGCGCGCCATGTCAGGCGAGCTCTCCACGCGCGCGTCGACCTCCTCGTCGAG CAGCTCCCCTCCCGGCGACGCGCGGGGGCCGGAACATGGAGGGACGCCGCGTGGCGAGGT GTCGTCCAAGCGCCGTCTGGTGCTGCGGCGGCGGCAGCGGTGGCGGCGTCTCGGCGGCGG CGCCGCGGCGTCGTGGGCGGCGGCGGACCCGCGGGCGAGGTGGGTCAGGGAGTGGAACCG CGCGTACCTGCTGGCCTGCGCGGCGGGGCTCATGGTGGACCCGCTGTTCCTGTACGCCGT GTCGCTGAGCGGGCCGCTCATGTGCGTCTTCCTCGACGGCTGGCTCGCCGCCGCGGTCAC CGCGCTCCGGTGCATGGTGGACGCCATGCACGCGTGGAACATCGTGACGCAGCTCCGCGT CTCGCGCGCCGGGCGGGAGCGGGCGTGCGCCGCCGGCCCCGACGAGGAGCAGCCTGAGGC TGAGGCCGCGGCGCCGGCGCCGGCGGCGGACGCGGACGCCGCCGCGAGCAACAAGCTCCG TGACCACGGGAGGTACAGGAAATGGTTGGTGCTGGATTTCTTCGTCATTCTCCCCGTGAT GCAGGTGGTGGTTTGGGTGGCGGCGCCGGCGATGATACGGGCGGGGTCGACGACGGCGGT GATGACGGTGATGCTGGTGGCGTTCATGTTGGAGTACCTGCCAAAGATCTACCACTCCGT CGTCTTCCTCCGCCGGATGCAGAACCAGTCCGGCCACATCTTCGGCACCATCTGGTGGGG CATCGCCCTCAACCTCATAGCCTACTTCGTCGCCGCTCACGCGGTGGGCGCGTGCTGGTA CTTGCTGGGGGTCCAGAGGGCCACCAAGTGCCTGAAGGAGCAGTGCTTGCTTGCCGGGCT GCCGGCGTGCGCGTCGTCCACGGCGGCGGTGGCGTGCGTCGACCCGCTGTACTACGGCGC CGCCGTGGCGTCCGTCGGCGGCGACCGGCTCGCCTGGGGCGGGAACGCGACGGCCAGGAA CGTGTGCCTCAGCAGCGGCGACAACTACCAGTATGGCGCGTACAAGTGGACCGTCATGCT CGTCTCCAACCCCAGCCGCCTCGAGAAGATGCTCCTCCCCATCTTCTGGGGCCTCATGAC CCTCAGCACGTTTGGGAATCTGGAGAGCACGACGGAGTGGGTGGAGATCGTGTTCAACAT AATGACGATCACGGGGGGCCTGATCCTGGTGACGATGCTGATCGGGAACATCAAGGTGTT CCTGAACGCGACGACGTCGAAGAAGCAGGCGATGCAGACGCGGCTGCGCGGGCTGGAGTG GTGGATGGAGCACAAGGGGGTGCCGCACGGGTTCCGGCAGCGGGTGCGGCAGTTCGAGCG GCAGCGGTGGGCGGCGACGCGCGGGGTGGACGAGTGCCAGATCGTCCGCGACCTCCCCGA GGGCCTCCGCCGCGACATCAAGTACCACCTCTGCCTCGACCTCGTCCGCCAGGTCCCCCT CTTCCACCACATGGACGACCTCGTCCTCGAGAACATCTGCGACCGCGTCAAGTCCCTCAT CTTCCCCAAGGGCGAGATCATTGTGAGAGAAGGGGACCCGGTGCAGAGGATGCTGTTCAT AGTGAGGGGGCACCTGCAGTGCAGCCAGGTGATGAGGAACGGGGCGACGAGCTGGTGCAC GCTGGGGCCGGGGAACTTCAGCGGGGACGAGCTGCTGTCGTGGTGCATGAGGCGGCCGTT CATGGAGCGGCTGCCGGCGTCGTCGTCGACGCTGGTGACGGCGGAGAGCACGGAGGCGTT CGGGCTGGAGGCCGGCGACGTCAAGTACGTGACGCAGCACTTCCGGTACACCTTCACCAG CGACAAGGTGCGGCGCAGCGCGCGGTACTACTCCCACGGGTGGCGGACGTGGGCGGCCGT CGCCGTGCAGCTCGCGTGGCGGCGGTACAAGCACCGCAAGACGCTCGCCTCGCTCTCCTT CATCCGCCCGCGCAGGCCGCTCTCGCGGTGCTCGTCCCTCGGGGAGGAGAAGCTCAGGCT CTACACCGCCATCCTCACCTCCCCCAAGCCCAACCAGGACGACGACTTCTAAATGACTCC TGTTGCATCAGATCAGCTGCCTGTACACGGATTCAAGAATGGGGAAGCGTTGGGATCTTG TATTTAGGGGTGAAAACGGGCGGGTATTTTCCGCACCCGCCTGACCCGACGGTTGCGGGA ATGATACGATAGTGGAAAATATATTGTATGAGTTCTATTTGAATCCGTGAATAAATATGA GTTAG