Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0500900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:24643665:24645918:-1 gene:Os05g0500900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GH3-4 description:Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5). (Os05t0500900-01)
Sequence	ATGCCGGAGGCGGTAGCGGCCGCGGTGTCGCCGGCGGCGGCGGCGGCGACGGCGATGTGC GCGGAGCACCGGGAGAAGCTCGAGCACATCGAGCGCGTGACGAGGAACGCGGGGCAGGAG CAGCGCCGCGTGCTGGAGGAGATCCTGGCGCAGAACGCGCAGGCCGAGTACCTGCGCCGC CTCGGCGTGCCGGGCGACGCGCCGGGCGCCGACGAGGCGTTCCGCCGTCTGGCGCCGCTC GTCACGTACGAGGACATCCTCCCCGACGTCCTCCGCATCGCCAACGGCGACACCTCGCCC ATCCTCTCCGGCAAGCCCGTCAGCGAGTTCCTCACCAGCTCCGGCACGTCGGGTGGGGAG AGGAAGCTGATGCCGACGATAGAGGAGGAGATGGAGCGGCGGTCGGGGCTGTACAGCTTG CTGATGCCGGTGATGAGCCGGCAGGTGCCCGGGCTGGACAAGGGCAAGGCCATGTACCTC TACTTCGTCAAGTCGGAGTGGCGCACGCCGGGCGGGCTGCCGGCGAGGCCCGTGCTGACG AGCTTCTACCGGAGCCGCTACTTCCTCGAGCGGCCTCACGACCCGTACACGGTGTACACG AGCCCCGACGAGGCGGTGCTGTGCGAGGACGCGTACCAGAGCATGTACGCGCAGCTCATC TGCGGCCTCGTCCACCGCGCCGACGTGCTCCGCGTCGGCGCGGTGTTCGCGTCGGGCTTC CTCCGCGCGATCCGCTTCCTGGAGAAGCACTGGCCGAGCCTGTGCCGCGACATCCGCGCG GGGGAGCTCGACGGCGGGGTCACCGACCCCGCCGTGCGCGGCGCCGTCGGGAGGGTGCTC CGCGGCGCCGACCCGGCGCTCGCCGACGCGATCGAGGCGGAGTGCGCGAGGCCGTCGTGG CAGGGCATCATCCGGAGGGTGTGGCCCAGCACCAAGTACATCGACGTCATCGTCACCGGC GCCATGGCGCAGTACATCCCGACACTGGAGTTCTACGGCGGCGGGCTGCCGCTCGCCTGC ACCATGTACGCCTCCTCCGAGTGCTACTTCGGCCTCAACCTCAACCCCATGTGCAAGCCC AGCGAGGTCGCCTACACCCTCATCCCAACAATGTGCTACTTCGAGTTCCTCCCCGTCAAC TCCGGCGCCAACGACGTCGCCGCCCCGGAGCCCGACCACCGCGGCCTCGTCGACCTCGTC GACGTCAAGCTCGGACACGAGTACGAGCTCGTCGTCACCACCTACTCCGGCCTGTACCGC TACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGAACGCGGCGCCCATGTTCGCC TTCGTGCGGCGGAAGAACGTGGCCCTCAGCATCGACTCCGACAAGACGGACGAGGCGGAG CTGCACGCGGCGGTGACCGAGGCGGTGCAGCACCTGGCGCCGTTCGGGGCGTCGCTGGTG GAGTACACGAGCTACGCCGACACGGCGACCACCATCCCGGGCCACTACGTGCTGTTCTGG GAGCTCAGGTCGCCGGCGGGCGGGACGCCGGTGCCGGCGTCGGTGTTCGAGGACTGCTGC CTCGCCGTCGAGGAAGGGCTCAACAGCGTGTACCGCCAGTGCCGCGCCGCCGACCGGTCG ATCGGGCCGCTGGAGATCCGCGTCGTGGCGGACGGCACGTTCGACAAGCTCATGGACTAC GCGCTCAGCCGCGGCGCGTCCATCAACCAGTACAAGGCGCCGCGCTGCGTGCGCCCGGGC CCCGTCGTCGAGCTGCTCGACGGCAGGGTGCAGGCCACCTACTTCAGCCCCAAGTGCCCC AAATGGTGCGCCGGCGGCAACAAGCAGTGGATCAGCAGCGGCGCCGCCGCGAAGAAGACG ACGACGACCTGTGATAGCTTGGCTGTGTGA

Peptide Sequence

PEP ID	Os05t0500900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:24643665:24645918:-1 gene:Os05g0500900 transcript:Os05t0500900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GH3-4 description:Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5). (Os05t0500900-01)
Sequence	MPEAVAAAVSPAAAAATAMCAEHREKLEHIERVTRNAGQEQRRVLEEILAQNAQAEYLRR LGVPGDAPGADEAFRRLAPLVTYEDILPDVLRIANGDTSPILSGKPVSEFLTSSGTSGGE RKLMPTIEEEMERRSGLYSLLMPVMSRQVPGLDKGKAMYLYFVKSEWRTPGGLPARPVLT SFYRSRYFLERPHDPYTVYTSPDEAVLCEDAYQSMYAQLICGLVHRADVLRVGAVFASGF LRAIRFLEKHWPSLCRDIRAGELDGGVTDPAVRGAVGRVLRGADPALADAIEAECARPSW QGIIRRVWPSTKYIDVIVTGAMAQYIPTLEFYGGGLPLACTMYASSECYFGLNLNPMCKP SEVAYTLIPTMCYFEFLPVNSGANDVAAPEPDHRGLVDLVDVKLGHEYELVVTTYSGLYR YRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHLAPFGASLV EYTSYADTATTIPGHYVLFWELRSPAGGTPVPASVFEDCCLAVEEGLNSVYRQCRAADRS IGPLEIRVVADGTFDKLMDYALSRGASINQYKAPRCVRPGPVVELLDGRVQATYFSPKCP KWCAGGNKQWISSGAAAKKTTTTCDSLAV

Transcript Sequence

Transcript ID	Os05t0500900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:24643665:24645918:-1 gene:Os05g0500900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GH3-4 description:Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5). (Os05t0500900-01)
Sequence	GAGACAGCAAGCCTAGTTCACTTCACTGATCACAAGCTCAGCTAAGCCAAGCACTCCCTA GCTACTACTACACGACACGCGTGCCATGCCGGAGGCGGTAGCGGCCGCGGTGTCGCCGGC GGCGGCGGCGGCGACGGCGATGTGCGCGGAGCACCGGGAGAAGCTCGAGCACATCGAGCG CGTGACGAGGAACGCGGGGCAGGAGCAGCGCCGCGTGCTGGAGGAGATCCTGGCGCAGAA CGCGCAGGCCGAGTACCTGCGCCGCCTCGGCGTGCCGGGCGACGCGCCGGGCGCCGACGA GGCGTTCCGCCGTCTGGCGCCGCTCGTCACGTACGAGGACATCCTCCCCGACGTCCTCCG CATCGCCAACGGCGACACCTCGCCCATCCTCTCCGGCAAGCCCGTCAGCGAGTTCCTCAC CAGCTCCGGCACGTCGGGTGGGGAGAGGAAGCTGATGCCGACGATAGAGGAGGAGATGGA GCGGCGGTCGGGGCTGTACAGCTTGCTGATGCCGGTGATGAGCCGGCAGGTGCCCGGGCT GGACAAGGGCAAGGCCATGTACCTCTACTTCGTCAAGTCGGAGTGGCGCACGCCGGGCGG GCTGCCGGCGAGGCCCGTGCTGACGAGCTTCTACCGGAGCCGCTACTTCCTCGAGCGGCC TCACGACCCGTACACGGTGTACACGAGCCCCGACGAGGCGGTGCTGTGCGAGGACGCGTA CCAGAGCATGTACGCGCAGCTCATCTGCGGCCTCGTCCACCGCGCCGACGTGCTCCGCGT CGGCGCGGTGTTCGCGTCGGGCTTCCTCCGCGCGATCCGCTTCCTGGAGAAGCACTGGCC GAGCCTGTGCCGCGACATCCGCGCGGGGGAGCTCGACGGCGGGGTCACCGACCCCGCCGT GCGCGGCGCCGTCGGGAGGGTGCTCCGCGGCGCCGACCCGGCGCTCGCCGACGCGATCGA GGCGGAGTGCGCGAGGCCGTCGTGGCAGGGCATCATCCGGAGGGTGTGGCCCAGCACCAA GTACATCGACGTCATCGTCACCGGCGCCATGGCGCAGTACATCCCGACACTGGAGTTCTA CGGCGGCGGGCTGCCGCTCGCCTGCACCATGTACGCCTCCTCCGAGTGCTACTTCGGCCT CAACCTCAACCCCATGTGCAAGCCCAGCGAGGTCGCCTACACCCTCATCCCAACAATGTG CTACTTCGAGTTCCTCCCCGTCAACTCCGGCGCCAACGACGTCGCCGCCCCGGAGCCCGA CCACCGCGGCCTCGTCGACCTCGTCGACGTCAAGCTCGGACACGAGTACGAGCTCGTCGT CACCACCTACTCCGGCCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTT CAAGAACGCGGCGCCCATGTTCGCCTTCGTGCGGCGGAAGAACGTGGCCCTCAGCATCGA CTCCGACAAGACGGACGAGGCGGAGCTGCACGCGGCGGTGACCGAGGCGGTGCAGCACCT GGCGCCGTTCGGGGCGTCGCTGGTGGAGTACACGAGCTACGCCGACACGGCGACCACCAT CCCGGGCCACTACGTGCTGTTCTGGGAGCTCAGGTCGCCGGCGGGCGGGACGCCGGTGCC GGCGTCGGTGTTCGAGGACTGCTGCCTCGCCGTCGAGGAAGGGCTCAACAGCGTGTACCG CCAGTGCCGCGCCGCCGACCGGTCGATCGGGCCGCTGGAGATCCGCGTCGTGGCGGACGG CACGTTCGACAAGCTCATGGACTACGCGCTCAGCCGCGGCGCGTCCATCAACCAGTACAA GGCGCCGCGCTGCGTGCGCCCGGGCCCCGTCGTCGAGCTGCTCGACGGCAGGGTGCAGGC CACCTACTTCAGCCCCAAGTGCCCCAAATGGTGCGCCGGCGGCAACAAGCAGTGGATCAG CAGCGGCGCCGCCGCGAAGAAGACGACGACGACCTGTGATAGCTTGGCTGTGTGAGAGAG AATTTGCTAGCTATGGTGATTAATTAAGGAGCTAATTAAGCATGGATGGTTGATTAATCG GTTAGCTAATCAACGAGTGTTAGTTCAGGGTAGTAGTACGTACGTATGATCATCTAGCTA TTGGGCTTTTGTTTTCTTTTCTTTTCTCCTCTCTCACTTTTGTAATAAAGTACTAAAATT TTCC