Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0496500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:24384902:24387337:-1 gene:Os05g0496500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:latex-abundant protein, latex-abundant protein-like protein, Metacaspase 5 description:Similar to Latex-abundant protein. (Os05t0496500-01)
Sequence	ATGGGGGGCCGGAAGCGCGCGCTGCTGGTGGGCATCAACTACCCGGGCACCAAGGCGGAG CTCAAGGGGTGCCACAACGACGTGGCCCGCATGCGCCGCGCCCTCGTCGACCGCTTCGGC TTCGACGAGGCCGACATCCGCGTCCTCGCCGACGCCGACCGGTCGGCGCCGCAGCCCACG GGGGCCAACATCCGCCGGGAGCTCGCGCGCCTCGTCGGCGACGCCCGCCCCGGGGACTTC CTCTTCTTCCACTACAGCGGCCACGGGACGCGGCTGCCGGCGGAGACCGGCCAGGACGAC GACACCGGCTACGACGAGTGCATCGTGCCCTCCGACATGAACCTCATCACAGACCAAGAT TTCACAGAACTCGTTCAAAAGGTCCCAGATGACTGCTTATTCACCATAGTATCTGACTCC TGCCACAGCGGTGGTCTACTTGACAAGACCAAGGAGCAGATTGGGCACAGCACCAAGCAG AACCAGGCCCAGCAGATCAAGCGAGAAGAACGTTCTGACTCTGGCACCGGCGGTTTCCGA TCCTTCCTCAAAGAAACCCTCAAAGAAACAGTCCGGGACGCGTTCGAGTCTCGAGGAGTT CACATCCCTCACCAGAGCAGCCGCCGCAACGACGACGAGGATGAGGAGCCACACATGGGC TCATCCTCCCATGGTGGCGATCGCATCAAGAACCGGTCATTGCCCCTCTCGACGTTGATT GAGATGCTCAAGGAGAAGACCGGCAAGGACGACATTGACGTTGGCTCGATCCGGATGACG CTGTTCAGCCTCTTCGGTGACGACGCGAGCCCCAAGATCAAGAAGTTCATGAAGGTCATG CTGACCAAGCTCCAGGAGGGCCAGCACGGCGGCGTGATGGGCTTGGTGGGCGCCCTGGCG CAGGAGTTCATGAAGGCTAAGCTGGAGGGCAACCAGGAGGCGGACGCCCTCGAGCCGGCC ATGAAACAGGAGGTGCACAGCGTCCACGAGGCGTACGCCGGCACGACGGCGAGGGTGAGC AATGGCGTGCTGATTAGCGGGTGCCAGACCGACCAGACATCGGCGGACGCCACGACGCCC AAGGGCGTGTCCTACGGCGCGCTCAGCAACGCCATCCAGACCATCCTGTCGGAGAAGAGC GGCAGGGTGACGAACAAGGAGCTCGTGCTGAGAGCGCGCGAGTTGTTGTCCAAGCAAGGG TACACCCAGCAGCCTGGCCTTTACTGCAGTGACAAGCACACCAGTGTGGCCTTCATATGC TGA

Peptide Sequence

PEP ID	Os05t0496500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:24384902:24387337:-1 gene:Os05g0496500 transcript:Os05t0496500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:latex-abundant protein, latex-abundant protein-like protein, Metacaspase 5 description:Similar to Latex-abundant protein. (Os05t0496500-01)
Sequence	MGGRKRALLVGINYPGTKAELKGCHNDVARMRRALVDRFGFDEADIRVLADADRSAPQPT GANIRRELARLVGDARPGDFLFFHYSGHGTRLPAETGQDDDTGYDECIVPSDMNLITDQD FTELVQKVPDDCLFTIVSDSCHSGGLLDKTKEQIGHSTKQNQAQQIKREERSDSGTGGFR SFLKETLKETVRDAFESRGVHIPHQSSRRNDDEDEEPHMGSSSHGGDRIKNRSLPLSTLI EMLKEKTGKDDIDVGSIRMTLFSLFGDDASPKIKKFMKVMLTKLQEGQHGGVMGLVGALA QEFMKAKLEGNQEADALEPAMKQEVHSVHEAYAGTTARVSNGVLISGCQTDQTSADATTP KGVSYGALSNAIQTILSEKSGRVTNKELVLRARELLSKQGYTQQPGLYCSDKHTSVAFIC

Transcript Sequence

Transcript ID	Os05t0496500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:24384902:24387337:-1 gene:Os05g0496500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:latex-abundant protein, latex-abundant protein-like protein, Metacaspase 5 description:Similar to Latex-abundant protein. (Os05t0496500-01)
Sequence	GCGATGGGGGGCCGGAAGCGCGCGCTGCTGGTGGGCATCAACTACCCGGGCACCAAGGCG GAGCTCAAGGGGTGCCACAACGACGTGGCCCGCATGCGCCGCGCCCTCGTCGACCGCTTC GGCTTCGACGAGGCCGACATCCGCGTCCTCGCCGACGCCGACCGGTCGGCGCCGCAGCCC ACGGGGGCCAACATCCGCCGGGAGCTCGCGCGCCTCGTCGGCGACGCCCGCCCCGGGGAC TTCCTCTTCTTCCACTACAGCGGCCACGGGACGCGGCTGCCGGCGGAGACCGGCCAGGAC GACGACACCGGCTACGACGAGTGCATCGTGCCCTCCGACATGAACCTCATCACAGACCAA GATTTCACAGAACTCGTTCAAAAGGTCCCAGATGACTGCTTATTCACCATAGTATCTGAC TCCTGCCACAGCGGTGGTCTACTTGACAAGACCAAGGAGCAGATTGGGCACAGCACCAAG CAGAACCAGGCCCAGCAGATCAAGCGAGAAGAACGTTCTGACTCTGGCACCGGCGGTTTC CGATCCTTCCTCAAAGAAACCCTCAAAGAAACAGTCCGGGACGCGTTCGAGTCTCGAGGA GTTCACATCCCTCACCAGAGCAGCCGCCGCAACGACGACGAGGATGAGGAGCCACACATG GGCTCATCCTCCCATGGTGGCGATCGCATCAAGAACCGGTCATTGCCCCTCTCGACGTTG ATTGAGATGCTCAAGGAGAAGACCGGCAAGGACGACATTGACGTTGGCTCGATCCGGATG ACGCTGTTCAGCCTCTTCGGTGACGACGCGAGCCCCAAGATCAAGAAGTTCATGAAGGTC ATGCTGACCAAGCTCCAGGAGGGCCAGCACGGCGGCGTGATGGGCTTGGTGGGCGCCCTG GCGCAGGAGTTCATGAAGGCTAAGCTGGAGGGCAACCAGGAGGCGGACGCCCTCGAGCCG GCCATGAAACAGGAGGTGCACAGCGTCCACGAGGCGTACGCCGGCACGACGGCGAGGGTG AGCAATGGCGTGCTGATTAGCGGGTGCCAGACCGACCAGACATCGGCGGACGCCACGACG CCCAAGGGCGTGTCCTACGGCGCGCTCAGCAACGCCATCCAGACCATCCTGTCGGAGAAG AGCGGCAGGGTGACGAACAAGGAGCTCGTGCTGAGAGCGCGCGAGTTGTTGTCCAAGCAA GGGTACACCCAGCAGCCTGGCCTTTACTGCAGTGACAAGCACACCAGTGTGGCCTTCATA TGCTGAGAGCCTGGAACATCAGCTGTGCTGCGTGGATTGCTACATATGCGAGAATCTTCC CTTTCCCCTTTGATGTTTTACATTGTTATGGAGTATGGAGTCTATTTGTTTTTTAAATGA AAGACAACATGGAGAGTGGTCGACTGTTAATATCAAGAGAAGATGTTACAAAATGACAGT AAAATAATCACCAAATCCCAGCCACCGGGAAATGCGATTTGTTTGTC