Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0490200-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:24081464:24086776:1 gene:Os05g0490200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1692 domain containing protein. (Os05t0490200-01);Similar to serologically defined breast cancer antigen NY-BR-84. (Os05t0490200-02);Similar to cDNA clone:J033072O04, full insert sequence. (Os05t0490200-03)
Sequence

AATGTTTTTGCAGGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACA
TCAAGAGGGGAAAGGCTACGAGTTAATTTTGACGTAACTTTTCCGAGTGTTCCCTGCACC
CTTCTCAGTGTTGATACCATGGATATTAGTGGAGAGCAGCATCATGACATTAGGCATGAT
ATAGAAAAGAGGCGATTAGACGCACATGGTAATGTCATTGAGGCTAGAAAAGAAGGCATT
GGTGGAGCAAAGATAGAGAGTCCATTGCAAAAACATGGAGGAAGACTCAGCAAAGGTGAA
GAATACTGTGGCACGTGTTATGGTGCTGAGGAGTCGGATGAACAATGCTGTAATTCTTGT
GAAGAAGTTAGGGAAGCATATAAGAAGAAAGGATGGGCCCTTACAAATCCTGATCTGATT
GACCAGTGCACCAGAGAAGATTTTGTGGAAAGAGTTAAAACTCAACAAGGTGAAGGTTGT
AATGTACATGGCTTTTTAGATGTCAGCAAAGTTGCAGGGAACTTACACTTTGCTCCAGGC
AAAGGATTTTATGAGTCAAATATAAATGTGCCTGAGCTGTCGGCACTTGAGCATGGTTTC
AACATCACACACAAAATAAATAAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAAT
CCACTTGATGGTGCTCAGTGGACACAACCAGCATCAGATGGGACATACCAATACTTCATA
AAAGTTGTTCCTACAATTTACACTGATCTAAGAGGGCGCAAGATTCATTCCAACCAATTC
TCAGTAACAGAGCATTTTAGAGATGGGAATATTCGCCCCAAACCCCAGCCTGGAGTATTT
TTCTTCTATGATTTCTCACCCATAAAGGTAGTAACAATGGAGAGAAATTCGTATGTAGTC
ATGTTCATTTTTCTCTTTTTATGA

Peptide Sequence

PEP ID

Os05t0490200-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:24081464:24086776:1 gene:Os05g0490200 transcript:Os05t0490200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1692 domain containing protein. (Os05t0490200-01);Similar to serologically defined breast cancer antigen NY-BR-84. (Os05t0490200-02);Similar to cDNA clone:J033072O04, full insert sequence. (Os05t0490200-03)
Sequence

NVFAGSYFYSATETKLVVDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHD
IEKRRLDAHGNVIEARKEGIGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSC
EEVREAYKKKGWALTNPDLIDQCTREDFVERVKTQQGEGCNVHGFLDVSKVAGNLHFAPG
KGFYESNINVPELSALEHGFNITHKINKLSFGTEFPGVVNPLDGAQWTQPASDGTYQYFI
KVVPTIYTDLRGRKIHSNQFSVTEHFRDGNIRPKPQPGVFFFYDFSPIKVVTMERNSYVV
MFIFLFL

Transcript Sequence

Transcript ID

Os05t0490200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:24081464:24086776:1 gene:Os05g0490200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1692 domain containing protein. (Os05t0490200-01);Similar to serologically defined breast cancer antigen NY-BR-84. (Os05t0490200-02);Similar to cDNA clone:J033072O04, full insert sequence. (Os05t0490200-03)
Sequence

TGTGTGTGCGCGAAGCAGCCGCCGCCGCGCGGATGTTGTGTGCTGTTCGCGTACTCTCCC
ATCCGTGGCCGTAATGGCTCGATGTGGTTTGGAATTCGAGGAGTTGGTTCTTGCCAACAA
GATCAAAGTCGGATTTCGAGTTGTCGATGGGGATGGGGATTTAGAGTAAGATTTGAATTC
AATGATGCGGTGGGCGTGTTCCTGCTGCTGCTGCATGCTTGAATGTTTGGAATATTTCCA
GGGGCACCTGACCGCGCTCTTGGTAATTTCTAGAAGAAGGTGCCCTTTTAGGTAGACAGG
TTTTGCGGTGTGTCAGGGTAACGAACTAAAGATGGGCATGTTGCGATGGGCATTGACGCT
AATGGTGATGTATGCTGCGCGCGATTTTTCTTTTCTTTTTCTTTTTCCTTTTCGGGTGTG
AGATTCCTGAAAAGTTCAGGAATGCTTTTGGCTGAGTTCCTGCGTCTCTGAGGAAGATAA
ATTAGTTTATTTTTTTCTGCTATTACTTGGATTTATGTGCTGCTATCACTGTTGGTTCGT
GAAGGGTAAGTTTTTGTGTTGTTGGCTCTGCATGTTGGATCATGCGTGCAAAATTAGGTC
GTCACAAGGATTATGCCGTTTTCAAGTTACCTTTTGAGTAAAGTCTGTTGTTGCAAAGGT
TCTGTTTTATTTGGCCAGCATGGCCTTACATTACTTTGGAGTTTGGAGAACAAGAGGTTA
CAAGTTGTCGAATTTTTATGCTCTTTTTGTTTGGTGCAATTTGTTAGTGTTTATTTTTTT
AAAAAAATTCTGGTAGTGAGAAGGTTCTTTCATAAAATGTTTTTGCAGGGTCATATTTTT
ATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAGAGGGGAAAGGCTACGAGTTA
ATTTTGACGTAACTTTTCCGAGTGTTCCCTGCACCCTTCTCAGTGTTGATACCATGGATA
TTAGTGGAGAGCAGCATCATGACATTAGGCATGATATAGAAAAGAGGCGATTAGACGCAC
ATGGTAATGTCATTGAGGCTAGAAAAGAAGGCATTGGTGGAGCAAAGATAGAGAGTCCAT
TGCAAAAACATGGAGGAAGACTCAGCAAAGGTGAAGAATACTGTGGCACGTGTTATGGTG
CTGAGGAGTCGGATGAACAATGCTGTAATTCTTGTGAAGAAGTTAGGGAAGCATATAAGA
AGAAAGGATGGGCCCTTACAAATCCTGATCTGATTGACCAGTGCACCAGAGAAGATTTTG
TGGAAAGAGTTAAAACTCAACAAGGTGAAGGTTGTAATGTACATGGCTTTTTAGATGTCA
GCAAAGTTGCAGGGAACTTACACTTTGCTCCAGGCAAAGGATTTTATGAGTCAAATATAA
ATGTGCCTGAGCTGTCGGCACTTGAGCATGGTTTCAACATCACACACAAAATAAATAAAC
TGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGTGCTCAGTGGACAC
AACCAGCATCAGATGGGACATACCAATACTTCATAAAAGTTGTTCCTACAATTTACACTG
ATCTAAGAGGGCGCAAGATTCATTCCAACCAATTCTCAGTAACAGAGCATTTTAGAGATG
GGAATATTCGCCCCAAACCCCAGCCTGGAGTATTTTTCTTCTATGATTTCTCACCCATAA
AGGTAGTAACAATGGAGAGAAATTCGTATGTAGTCATGTTCATTTTTCTCTTTTTATGAT
TCTATCTTAGCTTGCTCTACTCATCTTCTCAACCTGTGGATATGTGTTGCCAAGCTCATC
TGTTGAATGGCTGGCTGTGTTGGTGTGACCATTCTTGCTGCACATGCAGAATGCTCCAAA
TTCACCATCTGTTATTATTCAGTACTATTTAATTACTTTGGACACAAGAGAAGTCTACAA
TACCTTTGTTTCACCTTTATCTATTCTGACACTGCAGGACCAAACTGGAATTTGTAGGCT
TTAGGTCATGGAGAGTTTCTAAAGTTAGTTATTATACTAGTCAGTAGCTAAAAGAATCAG
TTCATTGATGAGATATATCTGTTAGGAGTATCCTAGCATAAAATTTGGTATTATCCTTTT
ATTATTTTTATTATTTGCTGAATGGCTCCAAAAATGTCTGCATATGCATCGTAACACTTT
GAATACAAAATTGACAGTGCATGTCTATACTCATTCAAAAGCCTCTAGTGGTGGTGGCAG
GGAATTTGCCACCCCACTATTGCTTTTTGCAGTTTTTACAAATTGTCCCCTGATATTTTT
CTAATATTGTGGAATAGTTCAATATTTGGTTCAAACAAGTGAATAGCAGATAATGAAATA
AACAAACAATTGATACTAAGATATTTGATAAAATATATATTTTTCTTACATATTATGATA
TTGTTTTTCTTCTGCCCATAGCAAAGCTTGGGCATTTTGCTAGTACTCAAAAGTCAAAAC
TTATACATGTGGATAACATACAGTTTCGTATCAATATAACGATTAACTAATTCTCATATT
CTCTTATCAGATTGAAAGGTACTCCTTTTAAGTTTTAACTCTTTAGTTCTGTGACCCACT
AAAATCTTAGTTCTCCACCTTATGTTTTTGCAGGTAATATTTACAGAAGAAAATAGTTCC
CTGCTCCACTATCTGACGAACCTATGTGCTATAGTGGGAGGGGTTTTCACCGTCTCCGGC
ATCATTGACTCGTTCATATATCACGGGCAGAAGGCACTCAAGAAAAAAATGGAGCTAGGC
AAGTACAGATGATTTACCTGAAACATGGACTGGCCCTCATGTTCCCCAAGTTCCCAAGTT
CCGTGGCTTGTAAAGGATCCATTGCTTAAGACCTGAAGACGTTGCTTTGCTGGAAGGTTT
TGCTAAGGCCATCAGAATTGACGATATTGCACATTAGTTGATCAAAAACTCGTTTACATG
TAAAAAAAGACAATATCATAGCGTTGGGCCTGGGGGAGTGCTTTGATGTCTCAGTGAGAC
TCTTTTTGAGTGGCCAAAACTGGCGAAATGAGATGGATAGATTAAATC