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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0490100-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:24078058:24079845:1 gene:Os05g0490100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L30. (Os05t0490100-01)
Sequence

ATGGCTCCCACCAAGAAGGCGAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTG
GTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTCCTCAAGACGCTGCGCAAC
TCCAAGGGGAAGCTGATTATCCTTGCAAACAACTGCCCTCCACTCAGGAAGTCTGAGATT
GAGTATTACGCCATGTTGGGAAAAGTTAGCGTTCACCATTTCCATGGAAACAATGTTGAT
CTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGGT
GACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGA

Peptide Sequence

PEP ID

Os05t0490100-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:24078058:24079845:1 gene:Os05g0490100 transcript:Os05t0490100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L30. (Os05t0490100-01)
Sequence

MAPTKKAKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEI
EYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTPASQ

Transcript Sequence

Transcript ID

Os05t0490100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:24078058:24079845:1 gene:Os05g0490100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L30. (Os05t0490100-01)
Sequence

AGCCGCCCATTCGCGCCGCCGCCGCAGAAGCCACCGCGCCCCGCAGCTCTCGTCGTCGTC
GCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGAAGAAGAGCACGGACAACA
TCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCG
TCCTCAAGACGCTGCGCAACTCCAAGGGGAAGCTGATTATCCTTGCAAACAACTGCCCTC
CACTCAGGAAGTCTGAGATTGAGTATTACGCCATGTTGGGAAAAGTTAGCGTTCACCATT
TCCATGGAAACAATGTTGATCTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCC
TCAGCATCATCGACCCTGGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAA
GAAGTTTTTACCTATTTAGTTGAGATGTAGGGTTCAGACGTGCTTACATGGCCAATGGCT
GTTTCTTGGTTATCTTTAGTTGTGTAATTTTGCTATGCTGAGTTGGGATCTGCCATACAG
ATAATACTCCATATTGTTGTTAAGGCATTTCTATGGTTTTGTTTGATGAGATCTCTATTT
ATATATTGAGCAAGTTTATTCTCCTGC