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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0489800-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:24067727:24070193:-1 gene:Os05g0489800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CENTROMERIC HISTONE 3C description:Centromeric histone 3 (Histone H3). (Os05t0489800-01)
Sequence

ATGGCTCGCACGAAGCACCCGGCGGTGAGGAAGTCGAAGGCGGAGCCCAAGAAGAAGCTC
CAGTTCGAACGCTCCCCTCGGCCGTCGAAGGCGCAGCGCGCTGGTGGCGGCACGGGTACC
TCGGCGACCACGAGGAGCGCGGCTGGAACATCGGCTTCAGGGACGCCTAGGCAGCAAACG
AAGCAGAGGAAGCCACACCGCTTCCGTCCAGGCACAGTGGCACTGCGGGAGATCAGGAAA
TTTCAGAAAACCACCGAACTGCTGATCCCGTTTGCACCATTTTCTCGGCTGGTCAGGGAG
ATCACTGATTTCTATTCAAAGGATGTGTCACGGTGGACCCTTGAAGCTCTCCTTGCATTG
CAAGAGGCAGCAGAATACCACTTAGTGGACATATTTGAAGTGTCAAATCTCTGCGCCATC
CATGCTAAGCGTGTTACCATCATGCAAAAGGACATGCAACTTGCCAGGCGTATCGGTGGG
CGGAGGCCATGGTGA

Peptide Sequence

PEP ID

Os05t0489800-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:24067727:24070193:-1 gene:Os05g0489800 transcript:Os05t0489800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CENTROMERIC HISTONE 3C description:Centromeric histone 3 (Histone H3). (Os05t0489800-01)
Sequence

MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATTRSAAGTSASGTPRQQT
KQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTLEALLAL
QEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRRPW

Transcript Sequence

Transcript ID

Os05t0489800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:24067727:24070193:-1 gene:Os05g0489800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CENTROMERIC HISTONE 3C description:Centromeric histone 3 (Histone H3). (Os05t0489800-01)
Sequence

ACGCCGCTTCAGTTTGAAAACCCACCGCCACGTCGCCGCCGCCGCCGCCGCCGCCGCCGA
CGCCGAGATGGCTCGCACGAAGCACCCGGCGGTGAGGAAGTCGAAGGCGGAGCCCAAGAA
GAAGCTCCAGTTCGAACGCTCCCCTCGGCCGTCGAAGGCGCAGCGCGCTGGTGGCGGCAC
GGGTACCTCGGCGACCACGAGGAGCGCGGCTGGAACATCGGCTTCAGGGACGCCTAGGCA
GCAAACGAAGCAGAGGAAGCCACACCGCTTCCGTCCAGGCACAGTGGCACTGCGGGAGAT
CAGGAAATTTCAGAAAACCACCGAACTGCTGATCCCGTTTGCACCATTTTCTCGGCTGGT
CAGGGAGATCACTGATTTCTATTCAAAGGATGTGTCACGGTGGACCCTTGAAGCTCTCCT
TGCATTGCAAGAGGCAGCAGAATACCACTTAGTGGACATATTTGAAGTGTCAAATCTCTG
CGCCATCCATGCTAAGCGTGTTACCATCATGCAAAAGGACATGCAACTTGCCAGGCGTAT
CGGTGGGCGGAGGCCATGGTGAAAATTTGTTTGCGAGCCATGCAGCATGATGGACAAGGA
GCAACATGTGTCGTTGATTAACATTTTAGAAAGTAGTGTAGATGTATCTTCACATAGGGA
TCAACTTACCCTTCGTTCCCATTCTAATTCAGTTGATGTTAGTATTTACCTTTTGCTCCA
TTTGGATTGGTCGAATTCAGGATTTCATCAAACAGTCGATTGTGAAATGTGAACCAGGAA
TTGTTGTGTTGATTGC