Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0488100-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:24000267:24002607:-1 gene:Os05g0488100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0488100-01)
Sequence

CCGCCAGCGACCGTCCGCCAGGCTCATTCCCGACGATGCCGGAGCGCTTCGATCCTGCCG
GCCGCCGGCGCAGGGGCATTCTCCCGCCGCCCGTCGGCGCAGGGGCATCGACGGGCCTCC
GACGCCGGCCTCCTGACGTCCATATCGCCGGCACAGGCGCATCGGCGGAACGGTCGGAGC
CCGCGCTGTCGCCTCCTGACCGACAGATCGAGGTCCGACCGCCGGCGTCCGACGTCTCAT
CGGTGTGCCGGCACAGGCGCATCGACGGAACGGTCGGAGCCCGCGCCGTCGCCTCCTGAC
CGACATGGTGGTCTTAACACTCCAGAAAATTGTGCTATAATTCAAGGTAGAGCTAACAGA
AATTGTGCTATAATTCAAAGTAGAGCTAACAGAAGGGATGATATTCTAGACGAGATGGAA
GTTGCTGCTTTAGCTTCTAGAATCAATTGGACAGAGTATCAGTTAGCTTCAATTGAAGCT
GCTGCGATTGGTAACATAATTAGGGATGGAAAGGTCATTGAAATTGCTCCAAACTCGAAA
GGAGGACCTCTACAGGATGTGCTGAGAAGTTTGCTTGAAAAAAATGAATTGATGATAAAT
AAACTGTGTGATGAGGATGCTCCACTGGAAAGTACCGCTTCAAGGCCGCTCTCAGGCTTC
TTTTTCAACACATTATGTAAGGAGCCTGGGTATCTCGCATTTGACACCATACGCTGCGGC
AAGCTTCTTTACCCTGAGTCACGCTTTGCTGCATTACCAGAGCCCGTATCTTTCCTTGCA
TCCACGCGTGGCCTTGTCTGCGTCTGTGGAAAGACAACAGGCTTGTACTATGTAACCAAC
ACGACCACCTTCAAGTGGGTTCAGCTACCACGCCACAGTTGTGATCATGGAGAACCAGCA
GTTGTCATCACATTCGAGGAACCCCTGACATCCTGCTTCGACGGTGCTGTTGAGCATTAT
CATGTCGTCGCTGCCTTCCACCTCAAGGGCAGCGTCTGGACATCTGAGTCATACTCCTCC
AGGACTGGGAGGTGGACTATTGCTAAAGATGCCCCTCCTGCTGTGGAGGTGAAGGCGGAG
TCTGGTGTTGGTACACTGGGCTGCGCCTTCTGGCGCACTTCCCTTGGGTCTATCCTCTGC
TATGACCCGGGGAAGGACCTCCTTAAAGTCATCCCTGCCCCTCGAGTGGTAAACCAAGAT
ACCGTATGGGAGCTTGGGCAAATGGAGGGAGATCTTACTGTGACCTGCTTCAAGGATGTT
GACGGTTTCCTCACATTGGGCGTGCTTAAAATAAACAAGCGACTGTTTGATGATAAGGTT
GCTGCACTCTGGACAGTTGTCGGCTCATTCTCCGGGGAGAAGGTTGGCAAAAGGGCTATG
TTGCTCCGCTCACAAGGCGCCGCAGAGGTCGTTGTCTGGGAACCCTTGGAGGAGCGCGTC
GTCGCCATGGACCTTGAAGGCCTCGTTACTGGCAACTTTGGGCCCCTAACCAATGAAGGG
TGTACTCCATGTTTTGTTCCTTACGTTCCATCGTCTGTGAGTATTTGA

Peptide Sequence

PEP ID

Os05t0488100-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:24000267:24002607:-1 gene:Os05g0488100 transcript:Os05t0488100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0488100-01)
Sequence

PPATVRQAHSRRCRSASILPAAGAGAFSRRPSAQGHRRASDAGLLTSISPAQAHRRNGRS
PRCRLLTDRSRSDRRRPTSHRCAGTGASTERSEPAPSPPDRHGGLNTPENCAIIQGRANR
NCAIIQSRANRRDDILDEMEVAALASRINWTEYQLASIEAAAIGNIIRDGKVIEIAPNSK
GGPLQDVLRSLLEKNELMINKLCDEDAPLESTASRPLSGFFFNTLCKEPGYLAFDTIRCG
KLLYPESRFAALPEPVSFLASTRGLVCVCGKTTGLYYVTNTTTFKWVQLPRHSCDHGEPA
VVITFEEPLTSCFDGAVEHYHVVAAFHLKGSVWTSESYSSRTGRWTIAKDAPPAVEVKAE
SGVGTLGCAFWRTSLGSILCYDPGKDLLKVIPAPRVVNQDTVWELGQMEGDLTVTCFKDV
DGFLTLGVLKINKRLFDDKVAALWTVVGSFSGEKVGKRAMLLRSQGAAEVVVWEPLEERV
VAMDLEGLVTGNFGPLTNEGCTPCFVPYVPSSVSI

Transcript Sequence

Transcript ID

Os05t0488100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:24000267:24002607:-1 gene:Os05g0488100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0488100-01)
Sequence

AGCCGCCAGCGACCGTCCGCCAGGCTCATTCCCGACGATGCCGGAGCGCTTCGATCCTGC
CGGCCGCCGGCGCAGGGGCATTCTCCCGCCGCCCGTCGGCGCAGGGGCATCGACGGGCCT
CCGACGCCGGCCTCCTGACGTCCATATCGCCGGCACAGGCGCATCGGCGGAACGGTCGGA
GCCCGCGCTGTCGCCTCCTGACCGACAGATCGAGGTCCGACCGCCGGCGTCCGACGTCTC
ATCGGTGTGCCGGCACAGGCGCATCGACGGAACGGTCGGAGCCCGCGCCGTCGCCTCCTG
ACCGACATGGTGGTCTTAACACTCCAGAAAATTGTGCTATAATTCAAGGTAGAGCTAACA
GAAATTGTGCTATAATTCAAAGTAGAGCTAACAGAAGGGATGATATTCTAGACGAGATGG
AAGTTGCTGCTTTAGCTTCTAGAATCAATTGGACAGAGTATCAGTTAGCTTCAATTGAAG
CTGCTGCGATTGGTAACATAATTAGGGATGGAAAGGTCATTGAAATTGCTCCAAACTCGA
AAGGAGGACCTCTACAGGATGTGCTGAGAAGTTTGCTTGAAAAAAATGAATTGATGATAA
ATAAACTGTGTGATGAGGATGCTCCACTGGAAAGTACCGCTTCAAGGCCGCTCTCAGGCT
TCTTTTTCAACACATTATGTAAGGAGCCTGGGTATCTCGCATTTGACACCATACGCTGCG
GCAAGCTTCTTTACCCTGAGTCACGCTTTGCTGCATTACCAGAGCCCGTATCTTTCCTTG
CATCCACGCGTGGCCTTGTCTGCGTCTGTGGAAAGACAACAGGCTTGTACTATGTAACCA
ACACGACCACCTTCAAGTGGGTTCAGCTACCACGCCACAGTTGTGATCATGGAGAACCAG
CAGTTGTCATCACATTCGAGGAACCCCTGACATCCTGCTTCGACGGTGCTGTTGAGCATT
ATCATGTCGTCGCTGCCTTCCACCTCAAGGGCAGCGTCTGGACATCTGAGTCATACTCCT
CCAGGACTGGGAGGTGGACTATTGCTAAAGATGCCCCTCCTGCTGTGGAGGTGAAGGCGG
AGTCTGGTGTTGGTACACTGGGCTGCGCCTTCTGGCGCACTTCCCTTGGGTCTATCCTCT
GCTATGACCCGGGGAAGGACCTCCTTAAAGTCATCCCTGCCCCTCGAGTGGTAAACCAAG
ATACCGTATGGGAGCTTGGGCAAATGGAGGGAGATCTTACTGTGACCTGCTTCAAGGATG
TTGACGGTTTCCTCACATTGGGCGTGCTTAAAATAAACAAGCGACTGTTTGATGATAAGG
TTGCTGCACTCTGGACAGTTGTCGGCTCATTCTCCGGGGAGAAGGTTGGCAAAAGGGCTA
TGTTGCTCCGCTCACAAGGCGCCGCAGAGGTCGTTGTCTGGGAACCCTTGGAGGAGCGCG
TCGTCGCCATGGACCTTGAAGGCCTCGTTACTGGCAACTTTGGGCCCCTAACCAATGAAG
GGTGTACTCCATGTTTTGTTCCTTACGTTCCATCGTCTGTGAGTATTTGAAGGACTGACG
ATGATCAGGAATAAACCAGATGTGATTAGCATACAATTGTATAGTATAAGAAATACACCT
CCATGTTACGTTTT