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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0488000-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:23996148:23997293:1 gene:Os05g0488000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os05t0488000-01)
Sequence

ATGGCGTCGAAGCTCGTGACGGCGGTCGCCCGTCAAGCGGCGGCCACATCTCGCGCCGCC
CGCTTAGCTGCGGTGGCGCGCCATGACGCGGCGGCCGCATCTCGCTCCGCCGGCTTAGCT
GCGGCGGCCGCATCTCGCGCCGCCCGCTTAGCTGCGGCGGCCGCATCTCGCGCCGCCCGC
TTGAAGCCTCGTCCCCCACTGGACGACGCTGCCCGCCTCTCCTTCCGCTACAGCAGTGAA
CCTCCAGATGATGGAAAGTGCGTGACAAAAGAGGACCTTGAGTCGGACGAAGCCGTGTGG
GCCTTATTTGAGCGCTATTGCAAGTCATACAACAGGAAGTATGATCATGCTCAGATGGTT
CGCCGCTTCCGTATATTCAAGTTCAATGCAAAGAGAACATATTGCTGGAACCAGTATCTT
CATAAAGACGTAAAGGAATTAGCTCGCGCCAAAAAGGATAGGGATTTAGGACTACCTGTC
GACTCTTGGTACCTACAAAAAGAGTTAGGCGAATACGACGATGGGGGGGAGCCACTTACT
GAATATTGGCGGAAATTTTGA

Peptide Sequence

PEP ID

Os05t0488000-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:23996148:23997293:1 gene:Os05g0488000 transcript:Os05t0488000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os05t0488000-01)
Sequence

MASKLVTAVARQAAATSRAARLAAVARHDAAAASRSAGLAAAAASRAARLAAAAASRAAR
LKPRPPLDDAARLSFRYSSEPPDDGKCVTKEDLESDEAVWALFERYCKSYNRKYDHAQMV
RRFRIFKFNAKRTYCWNQYLHKDVKELARAKKDRDLGLPVDSWYLQKELGEYDDGGEPLT
EYWRKF

Transcript Sequence

Transcript ID

Os05t0488000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:23996148:23997293:1 gene:Os05g0488000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os05t0488000-01)
Sequence

GCAGCATACACACTACTATCATCGATATTTTGTTTGAGATGTGCAACAGACAAAGCCCGA
CCGAAGAACCCTAACAATGGCGTCGAAGCTCGTGACGGCGGTCGCCCGTCAAGCGGCGGC
CACATCTCGCGCCGCCCGCTTAGCTGCGGTGGCGCGCCATGACGCGGCGGCCGCATCTCG
CTCCGCCGGCTTAGCTGCGGCGGCCGCATCTCGCGCCGCCCGCTTAGCTGCGGCGGCCGC
ATCTCGCGCCGCCCGCTTGAAGCCTCGTCCCCCACTGGACGACGCTGCCCGCCTCTCCTT
CCGCTACAGCAGTGAACCTCCAGATGATGGAAAGTGCGTGACAAAAGAGGACCTTGAGTC
GGACGAAGCCGTGTGGGCCTTATTTGAGCGCTATTGCAAGTCATACAACAGGAAGTATGA
TCATGCTCAGATGGTTCGCCGCTTCCGTATATTCAAGTTCAATGCAAAGAGAACATATTG
CTGGAACCAGTATCTTCATAAAGACGTAAAGGAATTAGCTCGCGCCAAAAAGGATAGGGA
TTTAGGACTACCTGTCGACTCTTGGTACCTACAAAAAGAGTTAGGCGAATACGACGATGG
GGGGGAGCCACTTACTGAATATTGGCGGAAATTTTGATGGAAAACCATCTGCCGCTGGTG
TGTCCTGCATCACTCCACATGTTACTGCAGTAAGAGCAGTTTGCTCCCCAAATCACTTCA
CTGTAATAACTAGTAGTCCTTTGACGTTCCGTGTTTCTTACTAAGGATGCGTTCGTTTGG
GTGATAGGGAGTGAGAATGCACATCGTTTTCCGCACGCACGCTTCCCAAACTACTAAACG
TTGTGGTTTTTTGCAAAAATTTTCTATATGAAAGTTGCTTTAAAAAATCATATTAATCCA
TTTTTAAAATTT