Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0481900-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:23697741:23700634:-1 gene:Os05g0481900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 6b description:Auxin efflux carrier domain containing protein. (Os05t0481900-01);Auxin efflux carrier domain containing protein. (Os05t0481900-02)
Sequence	ATGATGGGGAGGTCGGTGCTGGAGATGGTGGTGGCGGCGGCGCAGGGCGGCGGCGGCGCG GCGGGGGAGTCGGTGTTGGGCATGTTCAGGTACGCCGTGCTGCCCATCGCCAAGGTGTTC GTCGTCTGCTTCATGGGGTTCCTCATGGCGTCCAAGCGCGTCGGCGTGCTCAAGCCCAGC GGCCGCAAGCTTCTCAATGCGCTTGTGTTCTCTCTGCTCCTTCCTTGCCTAATATTTGCG CAGCTCGGGAGATCAATCACAATTGACAAGATCATGGAGTGGTGGTTCATTCCAGCAAAC ATTGCTCTGGGTGCAGTCTCTGCATCTTTGGTTGGACTTATAGTGGCATTGATTGTACGG CCGCCTTATCCATACTTCAAGTTCACCATCACTCACATTGGAATAGGGAACATTGGAAAT ATACCACTTGTCCTTATCTCGGCATTATGTCGCGACCAATTAAATCCGTTTGGTGACTCG AACAAATGTACTCAAGATGGAAATGCATACTTATCATTTGGTCAATGGGTTGGTGCCATT ATTGTTTACACATATGTGTTCAAGATGCTTGCTCCACCCCCCGGGCAGACCTTTGACAGC TGCGATGAGGAGAGAGATAAACTTCCAATTAAGGCTCCTAATACCATGTCAAGTGTAGCG AAATATCCATCAAGTGCTCATGGCAATACACATGAGGAAGAGCCCCTGCTATCTATAGAG GAGGAGGAGGAGGAGGAGGGGCAGGACGTTCATTCTTTAGGTTCAAAAATAATGATTCCT ATCAAGGGCATGGTTAGATTCCTACAAAAGAAGCAGCTCCTCCAACCACCAATCATTGCA TCTGTTCTTGCAATTACTCTCGGTGTTGTGCCATTCTTGAAGAATTTGATCCTCACAGAT GACGCGCCTCTATTCTTTTTAACAGATAGCTGTCTCATTCTTGGGGAAGCTATGATTCCG TGCATTTTGCTTGCCGTTGGTGGCAATCTTGTTGACGGCCCTGGTGAAGGAAGTAGGAGA CTTGGGGTTCGGACCACCGTCGCGATTATATTTGCACGCTTGATATTGGTTCCAATTGCT GGTATTGGCATCGTCTCATTTGCTGACAAGCTTGGATTTATTCCAAAAGGAGACAAGATG TTCAAGTTCGTCCTGTTACTGCAGCACTCTATGCCCACATCGGTACTATCAGGTGCTGTT GCAAACCTAAGAGGTTGTGGCAAGGAATCAGCTGCAATCTTGTTCTGGGTGCACATTTTT GCTGTCTTCTCCATGGCAGGATGGATTATCTTATATCTTACCATGCTGTTCTAG

Peptide Sequence

PEP ID	Os05t0481900-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:23697741:23700634:-1 gene:Os05g0481900 transcript:Os05t0481900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 6b description:Auxin efflux carrier domain containing protein. (Os05t0481900-01);Auxin efflux carrier domain containing protein. (Os05t0481900-02)
Sequence	MMGRSVLEMVVAAAQGGGGAAGESVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPS GRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVR PPYPYFKFTITHIGIGNIGNIPLVLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAI IVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAPNTMSSVAKYPSSAHGNTHEEEPLLSIE EEEEEEGQDVHSLGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTD DAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFARLILVPIA GIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIF AVFSMAGWIILYLTMLF

Transcript Sequence

Transcript ID	Os05t0481900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:23697741:23700634:-1 gene:Os05g0481900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN likes 6b description:Auxin efflux carrier domain containing protein. (Os05t0481900-01);Auxin efflux carrier domain containing protein. (Os05t0481900-02)
Sequence	AGCTGCTTGGCCGTCGCGACGCAGCCGCGTCTGTTCGATCAGTTCAGCTCGCGCGGTTTT AGGTGGGGAGGAATCCTGTTCGATTTCGCCGGTTGCTTGTGGTTTCGTGTCGGAGGCGGG GGCGGCGATGATGGGGAGGTCGGTGCTGGAGATGGTGGTGGCGGCGGCGCAGGGCGGCGG CGGCGCGGCGGGGGAGTCGGTGTTGGGCATGTTCAGGTACGCCGTGCTGCCCATCGCCAA GGTGTTCGTCGTCTGCTTCATGGGGTTCCTCATGGCGTCCAAGCGCGTCGGCGTGCTCAA GCCCAGCGGCCGCAAGCTTCTCAATGCGCTTGTGTTCTCTCTGCTCCTTCCTTGCCTAAT ATTTGCGCAGCTCGGGAGATCAATCACAATTGACAAGATCATGGAGTGGTGGTTCATTCC AGCAAACATTGCTCTGGGTGCAGTCTCTGCATCTTTGGTTGGACTTATAGTGGCATTGAT TGTACGGCCGCCTTATCCATACTTCAAGTTCACCATCACTCACATTGGAATAGGGAACAT TGGAAATATACCACTTGTCCTTATCTCGGCATTATGTCGCGACCAATTAAATCCGTTTGG TGACTCGAACAAATGTACTCAAGATGGAAATGCATACTTATCATTTGGTCAATGGGTTGG TGCCATTATTGTTTACACATATGTGTTCAAGATGCTTGCTCCACCCCCCGGGCAGACCTT TGACAGCTGCGATGAGGAGAGAGATAAACTTCCAATTAAGGCTCCTAATACCATGTCAAG TGTAGCGAAATATCCATCAAGTGCTCATGGCAATACACATGAGGAAGAGCCCCTGCTATC TATAGAGGAGGAGGAGGAGGAGGAGGGGCAGGACGTTCATTCTTTAGGTTCAAAAATAAT GATTCCTATCAAGGGCATGGTTAGATTCCTACAAAAGAAGCAGCTCCTCCAACCACCAAT CATTGCATCTGTTCTTGCAATTACTCTCGGTGTTGTGCCATTCTTGAAGAATTTGATCCT CACAGATGACGCGCCTCTATTCTTTTTAACAGATAGCTGTCTCATTCTTGGGGAAGCTAT GATTCCGTGCATTTTGCTTGCCGTTGGTGGCAATCTTGTTGACGGCCCTGGTGAAGGAAG TAGGAGACTTGGGGTTCGGACCACCGTCGCGATTATATTTGCACGCTTGATATTGGTTCC AATTGCTGGTATTGGCATCGTCTCATTTGCTGACAAGCTTGGATTTATTCCAAAAGGAGA CAAGATGTTCAAGTTCGTCCTGTTACTGCAGCACTCTATGCCCACATCGGTACTATCAGG TGCTGTTGCAAACCTAAGAGGTTGTGGCAAGGAATCAGCTGCAATCTTGTTCTGGGTGCA CATTTTTGCTGTCTTCTCCATGGCAGGATGGATTATCTTATATCTTACCATGCTGTTCTA GATACTAACTGCACTATGACATAATATGATATGTTCATGAAATACATGTTGCTGCAAAGT GCAAGGTGATTGGAAGTGCGACCCTGTTGGATCTGCGGGTTGCATTTTCCGGGCCGTGGA CAATTGCGAGAGGCCTGCTATTGTATGTTTTGTTTGGTTAGCTGCTGAAAACAATAGATG AGGCAAAGGAATTGTGTCAGCACCTCTTGTACATTTGATCGTAAAATACAGGATATCTCC AACTAATAGAGAGCCTTGTATCCCC