Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0476700-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:23463142:23465536:1 gene:Os05g0476700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat protein, plant U-box-containing protein 2, U-box protein 2 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os05t0476700-01)
Sequence	ATGGCCAACGCGAGGAACGCGGCTGCCGCGTCGCCGCCGCCGCCGTCGTCGTCTTCTTCG TATTCCTCGTCGGCGTCCGACGGGGAGATCCTCCGATCGCTGCACCGCCTGGCGAGGGAT CTGGCTGCGGCGGAGGCGCCGGCGCCGTTCTTGGAGACGGTGTTCGCGGCGGTGTCCAGG CGCGCGAAGCTTCTCGCCGCGGTGTTCGACGACCTGCTCCGGTGCGGGAGGCTGCCGCGG TCGGCGTCGCTGTGCCTGCGCGAGGTGCTGCTCGTGCTGCAGCGGTTCAAGGCGGTGGTG GCCGACTGCTCGGCGCGCAGCCGGATGCGGCTGCTACTGCAGGCCGACGAGGTGGCGGCG CGGGTGCGTGAGCTGCAGCATGACCTGGCCACGCTGCTGGATCTTCTCCCCGTTCCCGAG CTCGGGCTCGCCGACGACGTGGTGGACCTCCTCGCGCTCGCGTCCCGGCAGTGCCGGCGG AGCTCGCCGTCGGCGGACGCCGCGGAGCACGAGCTGAAGACCGGGGTGCTGGCGCTGATC CAGGAGGTGGAGAGGGAGATCGTGCCGGAGAGGGAGAGGCTGGAGGGCATCCTCGAGGAG GTTGGCATCAACGACCCGGCGTGCTGCAGCGACGAGATCGAGACACTGGAGCGGGAGATC GGCGACCGCGTGGCGGAGAGGTGGACGTCGGCCATGATTGCGCTCGTTGGGCTCCTCCGG TACGCCAAGTGCGTCCTCTTCACCGCGGCCACGCCGCGGCCGATGGACACCAAGGTGGAT GTTGACGACGATGACGATGACGACGACGCCGAGCCGCCGTCGCCGCCGCCGGACTTCCGG TGCCCCATCTCTCTCGATCTGATGCGCGACCCGGTTGTGTCGGCGAGCGGCCAGACGTAC GACCGGGAGTCCATCACCCGGTGGTTCGGCTCCGGCAAGTCGACGTGCCCCAAGACTGGG CAGGTGCTGGCCAATCTGGAGCTTGTCCCCAACAAGGCGCTCAAGAACTTGATCTCGCGG TGGTGCCGGGAGAACGGCGTCGCCATGGAGAGCTCCGAGCCAAGCAAGCCCGAGCCAGCG CCGGTGGTGACCGCGAACAAGGCGGCGTTGGAGGCGGCGCGCATGACGGCGTCGTTCCTC GTCAAGAAGCTCTCCGTCTCCTTCTCCCCCGCCGCGGCCAACCGCGTGGTGCACGAGATC CGGCAGCTCGCCAGGTCCGGCAACGACACGCGCGCCTTCATCGGGGAGGCCGGCGCCGTC CCGCTCCTCGTGCCGCTGCTCCACTCCGACGACACCGCCACCCAGCTCAACGCCGTCACG GCGCTGCTCAACCTGTCCATCCTCGACGCCAACAAGAAGCGCATCATGCACGCCGAGGGC GCCGTCGAGGCGATCTGCCACGCCATGGGCTCCGGCGCGACGTGGCGCGCCAAGGAGAAC GCGGCGGCCACCGTGCTCAGCCTGGCGTCCGTCCATTCCTACCGCCGCCGGCTTGGCCGG AACCCACGCGTCGTCGAGAGGGTCGTGCACCTCGTGCGCACCGGCCCCTCCAGCACCAAG AAGGACGCGATCGCCGCGCTCCTGTGCCTGTCCGGCGAGAGGGAGAACGTCGGGAAGCTC GTGGAAGCCGGCGCCGCGGAGGCGGCGCTGTCGGCGATCAGCGAGGAGGAGACCGCCGTG GCGGTGCTGGCGTCGCTGGCCAAGCGCGGCGGCGCGGAGGCGATCGTGAACATCGACGGC GCGGTGGTGCGCCTCGTGGCCGAGCTGCGGCGCGGCACGGAGTGGTCAAGGGAGTGCGCG GCCGCCGCGCTGGTGCTGCTCTGCCGCCGCGTGGGCGCCGCCGTGGTGGCGCAGGTGATG TCGGTCTCCGGCGTGGAGTGGGCGATATGGGAGCTGATGGCCACCGGCACGGAGCGCGCG CGGCGCAAGGCCGCGTCGCTCGGCAGGGCATGCCGGCGTTGGGCCGCGGCGGAGCAAACC GCGGAGTACCCCGCCACCTCCGACGTCACGACGACGGCCATTACAGCGTCGTGA

Peptide Sequence

PEP ID	Os05t0476700-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:23463142:23465536:1 gene:Os05g0476700 transcript:Os05t0476700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat protein, plant U-box-containing protein 2, U-box protein 2 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os05t0476700-01)
Sequence	MANARNAAAASPPPPSSSSSYSSSASDGEILRSLHRLARDLAAAEAPAPFLETVFAAVSR RAKLLAAVFDDLLRCGRLPRSASLCLREVLLVLQRFKAVVADCSARSRMRLLLQADEVAA RVRELQHDLATLLDLLPVPELGLADDVVDLLALASRQCRRSSPSADAAEHELKTGVLALI QEVEREIVPERERLEGILEEVGINDPACCSDEIETLEREIGDRVAERWTSAMIALVGLLR YAKCVLFTAATPRPMDTKVDVDDDDDDDDAEPPSPPPDFRCPISLDLMRDPVVSASGQTY DRESITRWFGSGKSTCPKTGQVLANLELVPNKALKNLISRWCRENGVAMESSEPSKPEPA PVVTANKAALEAARMTASFLVKKLSVSFSPAAANRVVHEIRQLARSGNDTRAFIGEAGAV PLLVPLLHSDDTATQLNAVTALLNLSILDANKKRIMHAEGAVEAICHAMGSGATWRAKEN AAATVLSLASVHSYRRRLGRNPRVVERVVHLVRTGPSSTKKDAIAALLCLSGERENVGKL VEAGAAEAALSAISEEETAVAVLASLAKRGGAEAIVNIDGAVVRLVAELRRGTEWSRECA AAALVLLCRRVGAAVVAQVMSVSGVEWAIWELMATGTERARRKAASLGRACRRWAAAEQT AEYPATSDVTTTAITAS

Transcript Sequence

Transcript ID	Os05t0476700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:23463142:23465536:1 gene:Os05g0476700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat protein, plant U-box-containing protein 2, U-box protein 2 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os05t0476700-01)
Sequence	ACCCCTTCCCAGCTCTCGAACAACTCAACGCGCTAAACGTCTCTCTCGCACGTATATATA TACTACGGCCTCACGCCTTCGTCTCCGCAACCATACAAATTTTTTTCTGAGTTCCAATTC GATTTGTTCGTTCGGTTACTGCAAAAGAAAGTCAGCAACAAAATGGCCAACGCGAGGAAC GCGGCTGCCGCGTCGCCGCCGCCGCCGTCGTCGTCTTCTTCGTATTCCTCGTCGGCGTCC GACGGGGAGATCCTCCGATCGCTGCACCGCCTGGCGAGGGATCTGGCTGCGGCGGAGGCG CCGGCGCCGTTCTTGGAGACGGTGTTCGCGGCGGTGTCCAGGCGCGCGAAGCTTCTCGCC GCGGTGTTCGACGACCTGCTCCGGTGCGGGAGGCTGCCGCGGTCGGCGTCGCTGTGCCTG CGCGAGGTGCTGCTCGTGCTGCAGCGGTTCAAGGCGGTGGTGGCCGACTGCTCGGCGCGC AGCCGGATGCGGCTGCTACTGCAGGCCGACGAGGTGGCGGCGCGGGTGCGTGAGCTGCAG CATGACCTGGCCACGCTGCTGGATCTTCTCCCCGTTCCCGAGCTCGGGCTCGCCGACGAC GTGGTGGACCTCCTCGCGCTCGCGTCCCGGCAGTGCCGGCGGAGCTCGCCGTCGGCGGAC GCCGCGGAGCACGAGCTGAAGACCGGGGTGCTGGCGCTGATCCAGGAGGTGGAGAGGGAG ATCGTGCCGGAGAGGGAGAGGCTGGAGGGCATCCTCGAGGAGGTTGGCATCAACGACCCG GCGTGCTGCAGCGACGAGATCGAGACACTGGAGCGGGAGATCGGCGACCGCGTGGCGGAG AGGTGGACGTCGGCCATGATTGCGCTCGTTGGGCTCCTCCGGTACGCCAAGTGCGTCCTC TTCACCGCGGCCACGCCGCGGCCGATGGACACCAAGGTGGATGTTGACGACGATGACGAT GACGACGACGCCGAGCCGCCGTCGCCGCCGCCGGACTTCCGGTGCCCCATCTCTCTCGAT CTGATGCGCGACCCGGTTGTGTCGGCGAGCGGCCAGACGTACGACCGGGAGTCCATCACC CGGTGGTTCGGCTCCGGCAAGTCGACGTGCCCCAAGACTGGGCAGGTGCTGGCCAATCTG GAGCTTGTCCCCAACAAGGCGCTCAAGAACTTGATCTCGCGGTGGTGCCGGGAGAACGGC GTCGCCATGGAGAGCTCCGAGCCAAGCAAGCCCGAGCCAGCGCCGGTGGTGACCGCGAAC AAGGCGGCGTTGGAGGCGGCGCGCATGACGGCGTCGTTCCTCGTCAAGAAGCTCTCCGTC TCCTTCTCCCCCGCCGCGGCCAACCGCGTGGTGCACGAGATCCGGCAGCTCGCCAGGTCC GGCAACGACACGCGCGCCTTCATCGGGGAGGCCGGCGCCGTCCCGCTCCTCGTGCCGCTG CTCCACTCCGACGACACCGCCACCCAGCTCAACGCCGTCACGGCGCTGCTCAACCTGTCC ATCCTCGACGCCAACAAGAAGCGCATCATGCACGCCGAGGGCGCCGTCGAGGCGATCTGC CACGCCATGGGCTCCGGCGCGACGTGGCGCGCCAAGGAGAACGCGGCGGCCACCGTGCTC AGCCTGGCGTCCGTCCATTCCTACCGCCGCCGGCTTGGCCGGAACCCACGCGTCGTCGAG AGGGTCGTGCACCTCGTGCGCACCGGCCCCTCCAGCACCAAGAAGGACGCGATCGCCGCG CTCCTGTGCCTGTCCGGCGAGAGGGAGAACGTCGGGAAGCTCGTGGAAGCCGGCGCCGCG GAGGCGGCGCTGTCGGCGATCAGCGAGGAGGAGACCGCCGTGGCGGTGCTGGCGTCGCTG GCCAAGCGCGGCGGCGCGGAGGCGATCGTGAACATCGACGGCGCGGTGGTGCGCCTCGTG GCCGAGCTGCGGCGCGGCACGGAGTGGTCAAGGGAGTGCGCGGCCGCCGCGCTGGTGCTG CTCTGCCGCCGCGTGGGCGCCGCCGTGGTGGCGCAGGTGATGTCGGTCTCCGGCGTGGAG TGGGCGATATGGGAGCTGATGGCCACCGGCACGGAGCGCGCGCGGCGCAAGGCCGCGTCG CTCGGCAGGGCATGCCGGCGTTGGGCCGCGGCGGAGCAAACCGCGGAGTACCCCGCCACC TCCGACGTCACGACGACGGCCATTACAGCGTCGTGAAATTCCACCACGGCCACATTGATT AATTCATAGGAGCAGATAAAATTTCGATTTTTTTTCCCACGCACAACGAATGCTTGTACA AAAAAAAAAATTGTTTCTTGCCTTCAAGGCCTTCACGATTCTTTGGTTCATGGGACCAGT TTGAGTAATTGATAAACTGCACATACAATTATACAAAGATCCATTTCTCTCCAAA