Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0475300-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:23351926:23356155:1 gene:Os05g0475300 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0475300-01)
Sequence	ATGTACCCGGTGGTGACGGGGCCGCCGCCGGCGAGGCTGCCGGCGTCGACGCGGGTGGAC AAGGCGACGAGCCACCTGCTGCAGGGCCCCGACTGGGCCATCAACCTCGAGATATGCGAC ACCCTCAACGCCGACCGCTGGCAAACAAAGGATGTGGTAAAAGCTGTGAAGAAGCGGTTG CAACATAAAGATCCAAGAGTTCAGTTTTTCACTTTGACGTTGTTGGAGACAATGATGAAG AACTGTGGTGAATATGTCCATTTTGAAGTTGTTGAACAACATATTTTGCAAGAAATGGTT AGAATTGTCCAGAAGAAGCATGATACTCAAGTGAGGGATAAAGTATTGATACTTCTGGAC TCATGGCAAGAAGCATTTGGTGGACCTGGAGGCAAATATCCACAGTATTACTGGTCATAC ATTGAACTTAAGAGGTCAGGAATAATGTTTCCCAGGCGCCCTGTAGATGCTCCTCCAATA TTTACTCCCCCTGCAACACATCATACTCAGTCTTATGGTTCACCTACATATCCTGCTGGA AGTCTAAATGAGAGAATGACATCCGATGTTGAAACTCTGAGTTTAGGGGACTTAAATAAT ATTAGAGATACAACAGAACTTCTGTGTGATATGGTGAATGCTTTGAATCCTTCTGATCGC ATGGCTGTTAAAGATGAAATTATTTCAGAGCTTGTCACCCAATGCCGATCAAATCAACAA AAGCTCATGCGATTTGTCAGTTCCACAGGAAATGAGGAGCTACTGAAGCAAGGCCTAGAA ATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGCCATTGCTTCTGGAGCTCCT TTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCA TCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAG TTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCATCATCC AGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCT GTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGA GAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAGCCCCCCTGAAGCATCTACA GATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGTCACGTCAAATGGGCCAGAA TTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACATTACTCTTCTAACCAGCAG GCATATCCAACGAATCAAGCTTACACCCCATACAACAATTATGTTGTACCTTGGGCCCAA GCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAACTCAGCCCATGCAACAATATGGA TCTAGCTACCCAGCACCACCATGGGCGATGCCAGCAAGTGTCAACTCAACCAATCCTTTT CAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTCTGTTGCCCCCACAAATACC TATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCAACAAGTGCCATCTCCTGCA ACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATG GCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGAAACTACAGCGGCTGCGGCC AAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAGTTATGGT GGAGGCAAGATGAGTAGAACGGCGAGCATGCCTAGTCCAAATGGCAGTGGCCAACCTTTG CTGGGTGGGAAGAAATAG

Peptide Sequence

PEP ID	Os05t0475300-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:23351926:23356155:1 gene:Os05g0475300 transcript:Os05t0475300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0475300-01)
Sequence	MYPVVTGPPPARLPASTRVDKATSHLLQGPDWAINLEICDTLNADRWQTKDVVKAVKKRL QHKDPRVQFFTLTLLETMMKNCGEYVHFEVVEQHILQEMVRIVQKKHDTQVRDKVLILLD SWQEAFGGPGGKYPQYYWSYIELKRSGIMFPRRPVDAPPIFTPPATHHTQSYGSPTYPAG SLNERMTSDVETLSLGDLNNIRDTTELLCDMVNALNPSDRMAVKDEIISELVTQCRSNQQ KLMRFVSSTGNEELLKQGLEINDHLQSVLAKHDAIASGAPLPVETPRKDEIPREDPKIKP SAPPIAPPSAPPVEEDEDDEFAQIARRKNKSVISSDEASSSAGDQALVPVDPVTSEASSS VASNAVVPVDSSPASGTRTREQDMIDLLSLTLYSPPEASTDSSSQTQNGTQQSVTSNGPE LPPNYQPAASNGSHYSSNQQAYPTNQAYTPYNNYVVPWAQAGQGTQAGGAYQTQPMQQYG SSYPAPPWAMPASVNSTNPFQPATYQMQNPPVASVAPTNTYPAPSSPYAAPPRQQVPSPA TKPMQQYNSFVSQTRSGPAMAQDVRMNGNPRPSETTAAAAKPYYMPDNLFGDLIDVKSYG GGKMSRTASMPSPNGSGQPLLGGKK

Transcript Sequence

Transcript ID	Os05t0475300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:23351926:23356155:1 gene:Os05g0475300 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0475300-01)
Sequence	AGCTCCGTATCGCGTACGACACCCGAGCCGAACCCCCCAACCCGAGGCGGCGGCGGCTGC GGCGGCGGAGGCGAGCGGGATGTACCCGGTGGTGACGGGGCCGCCGCCGGCGAGGCTGCC GGCGTCGACGCGGGTGGACAAGGCGACGAGCCACCTGCTGCAGGGCCCCGACTGGGCCAT CAACCTCGAGATATGCGACACCCTCAACGCCGACCGCTGGCAAACAAAGGATGTGGTAAA AGCTGTGAAGAAGCGGTTGCAACATAAAGATCCAAGAGTTCAGTTTTTCACTTTGACGTT GTTGGAGACAATGATGAAGAACTGTGGTGAATATGTCCATTTTGAAGTTGTTGAACAACA TATTTTGCAAGAAATGGTTAGAATTGTCCAGAAGAAGCATGATACTCAAGTGAGGGATAA AGTATTGATACTTCTGGACTCATGGCAAGAAGCATTTGGTGGACCTGGAGGCAAATATCC ACAGTATTACTGGTCATACATTGAACTTAAGAGGTCAGGAATAATGTTTCCCAGGCGCCC TGTAGATGCTCCTCCAATATTTACTCCCCCTGCAACACATCATACTCAGTCTTATGGTTC ACCTACATATCCTGCTGGAAGTCTAAATGAGAGAATGACATCCGATGTTGAAACTCTGAG TTTAGGGGACTTAAATAATATTAGAGATACAACAGAACTTCTGTGTGATATGGTGAATGC TTTGAATCCTTCTGATCGCATGGCTGTTAAAGATGAAATTATTTCAGAGCTTGTCACCCA ATGCCGATCAAATCAACAAAAGCTCATGCGATTTGTCAGTTCCACAGGAAATGAGGAGCT ACTGAAGCAAGGCCTAGAAATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGC CATTGCTTCTGGAGCTCCTTTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGA AGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGA AGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAG TAGTGATGAGGCATCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAAC TTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGC CAGTGGTACTCGGACAAGAGAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAG CCCCCCTGAAGCATCTACAGATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGT CACGTCAAATGGGCCAGAATTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACA TTACTCTTCTAACCAGCAGGCATATCCAACGAATCAAGCTTACACCCCATACAACAATTA TGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAACTCA GCCCATGCAACAATATGGATCTAGCTACCCAGCACCACCATGGGCGATGCCAGCAAGTGT CAACTCAACCAATCCTTTTCAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTC TGTTGCCCCCACAAATACCTATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCA ACAAGTGCCATCTCCTGCAACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAAC AAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGA AACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGAT TGATGTGAAGAGTTATGGTGGAGGCAAGATGAGTAGAACGGCGAGCATGCCTAGTCCAAA TGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTAC TACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGG TTACATTTGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTT GTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTT GGTTTGTGAAGTATGTGTATATAATATTCAGCTGATGTGCAGACATTCTCTCATATATTG CCAAGCTGAAACAACTTTT