Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0472000-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:23178205:23178921:1 gene:Os05g0472000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:G1L8 description:Similar to LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6). (Os05t0472000-00)
Sequence

ATGGAGGGAGGAGGAGGTGGGGCGGACGGGCAGGCGCAGCCGGTGGCGCAGGCGCCGCCG
GCGATGCAGCCGATGCAGCAGCTGAGCAGGTACGAGTCGCAGAAGAGGAGGGACTGGAAC
ACGTTCCTGCAGTACCTGAAGAACCACCGGCCGCCGCTGACGCTGGCGAGGTGCAGCGGC
GCGCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCG
TCGGGGTGCGCCTACTACGGCCAGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGC
CAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGCGCCGCCTACGAGGAGAGC
GGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAG
GTCCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGC
ACGCAGCAGCAGCAGCCTCCCCCACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCC
GCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCCGCCGTCGCAGCAGAAGGC
AGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGAGGAGGAGGA
AGCACCACCACCACCACCGCTTCTGCTGCTGCACCGACCACCGCCACCCGAGTATAG

Peptide Sequence

PEP ID

Os05t0472000-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:23178205:23178921:1 gene:Os05g0472000 transcript:Os05t0472000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:G1L8 description:Similar to LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6). (Os05t0472000-00)
Sequence

MEGGGGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSG
AHVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEES
GHAPESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQPPPPPPPPPQHQPGA
AAGEASSSSSAAAAAVAAEGSGSSAAAAAATSQTGGGGGGSTTTTTASAAAPTTATRV

Transcript Sequence

Transcript ID

Os05t0472000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:23178205:23178921:1 gene:Os05g0472000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:G1L8 description:Similar to LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6). (Os05t0472000-00)
Sequence

ATGGAGGGAGGAGGAGGTGGGGCGGACGGGCAGGCGCAGCCGGTGGCGCAGGCGCCGCCG
GCGATGCAGCCGATGCAGCAGCTGAGCAGGTACGAGTCGCAGAAGAGGAGGGACTGGAAC
ACGTTCCTGCAGTACCTGAAGAACCACCGGCCGCCGCTGACGCTGGCGAGGTGCAGCGGC
GCGCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCG
TCGGGGTGCGCCTACTACGGCCAGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGC
CAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGCGCCGCCTACGAGGAGAGC
GGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAG
GTCCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGC
ACGCAGCAGCAGCAGCCTCCCCCACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCC
GCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCCGCCGTCGCAGCAGAAGGC
AGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGAGGAGGAGGA
AGCACCACCACCACCACCGCTTCTGCTGCTGCACCGACCACCGCCACCCGAGTATAG