Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0468900-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:23020500:23021600:1 gene:Os05g0468900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0468900-01)
Sequence

ATGGCCGCGCAGGAGAGCGCCGCGGGGACGACGAACCAGGTGATGCGGTGGCGGTACGGG
GACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACCTGCTGGTCGGGCTG
CTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCTGGGCGTGCCACCGG
TACACGCCCGACCCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGGCGGCGGGGGCCGCA
GCGGCGGCGTCGATGCACGGGCTCGACGCCGAGGCGATCGGGGGCCTGCCGGTGACGCTG
TACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCGGCGGTGGCGTCGAC
GACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCGCCGGCGAGAAGGTG
AAGGCCCTCCCGCCGTGCGGCCACTGCTTCCACCCGGACTGCGTCGACGCCTGGCTCCGT
TCCCAGCCCAGCTGCCCGCTCTGCCGGAGCCTCCTCCTCGCCGCCGCCGCCACCGCCGCC
AAACCCGACGTCAACGGCGGCGACGACGACGACTCCGCCGTGTGA

Peptide Sequence

PEP ID

Os05t0468900-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:23020500:23021600:1 gene:Os05g0468900 transcript:Os05t0468900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0468900-01)
Sequence

MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGRAVYLLVGLLVAVVVFVALCLYLRWACHR
YTPDPEASSSSSAAGAAGAAAAASMHGLDAEAIGGLPVTLYRPRDSSSPPAGKGGGGGVD
DDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSLLLAAAATAA
KPDVNGGDDDDSAV

Transcript Sequence

Transcript ID

Os05t0468900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:23020500:23021600:1 gene:Os05g0468900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0468900-01)
Sequence

GGCTAGCTGCCGCCACCACCACCACCACACGCCGGCCGGAGGACTGGTCAATCTCCCATG
TGCCTCCACCGCATATAGCGTGGAGAGCTAGCTAGCTCTACTACTGTGGCTGTGGCCTGT
GGGAGCAGGGAGCAATGGCCGCGCAGGAGAGCGCCGCGGGGACGACGAACCAGGTGATGC
GGTGGCGGTACGGGGACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACC
TGCTGGTCGGGCTGCTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCT
GGGCGTGCCACCGGTACACGCCCGACCCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGG
CGGCGGGGGCCGCAGCGGCGGCGTCGATGCACGGGCTCGACGCCGAGGCGATCGGGGGCC
TGCCGGTGACGCTGTACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCG
GCGGTGGCGTCGACGACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCG
CCGGCGAGAAGGTGAAGGCCCTCCCGCCGTGCGGCCACTGCTTCCACCCGGACTGCGTCG
ACGCCTGGCTCCGTTCCCAGCCCAGCTGCCCGCTCTGCCGGAGCCTCCTCCTCGCCGCCG
CCGCCACCGCCGCCAAACCCGACGTCAACGGCGGCGACGACGACGACTCCGCCGTGTGAA
GTGCAACCAGCGCGGCTAGCTGCCAACGCCAAGCTGCTCCGATCCGTCACCCCCACTGAC
GAAGCGGCCCCACCTGTAAGCTATCACACCACTTGCAGTTGCCTAGCTTGACCGCTTCAG
AAAGATCTCGCAATTAAAAAAGAAAAACGCCCGGTTCAACGGCGCGCGGTGCCTAACCAC
CAATGCGCCACGGCGAGGTGCGTCCTGTCGTGTGGAGGTCGCCGGAAATGGAGCCCTCAC
CATCGTTCTTTAGTCGCCGGCGTGGGGGCCATGACCTCGCCGGCGATCACTTTAATCTCC
TAGCTTTCTGTTCAAGTCTCCAGGGGGAATTTGGAGTGCTGTAAGCTGTACATACCTTTT
GAGTATTTAAAACGGGAGAGG