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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0467300-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:22932713:22935696:1 gene:Os05g0467300 gene_biotype:protein_coding transcript_biotype:protein_coding description:SelT/selW/selH selenoprotein family protein. (Os05t0467300-01)
Sequence

ATGGACCGCGTGCAGCTCCTCCTCGTCGGTCTCCCCGCCCTCCTCTTCCTCTCCGACCTC
TCCCACATCTTCGCGCCGCCGCCGCCGCATCTCCGGCACCCCCACCACCACCCGCCGCAC
CACCATCCCCATCCGCCTCACCACCACCCCCCGCATCACCCCCACCCGCCTCACCACCCG
CATCCGCCGCATCACCCCCACCCGCCTCACCACCCGCATCCGCCGCACCATCACCCCCAC
CCTCACCCCGATCCCGCCGCGGAGGCCATACAGGCTAACGTTGATGGAGCTGGATATGGC
ACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAAGGGGACTGCAATGACTATG
AAGCGCATGCTGGAAACATCATTTCCAGGCATTCATGTTATCTTGCACAATTACCCTCCA
CCCTTCCCCAAACGTGTACTTGGCAAACTTGTGCCAATTCTTCAGGTTGGAGCCATTGCA
ACAATAATGGCTGGTGATCATATTTTCCCCAGACTTGGAATGGTTCCACCCCCATGGTAC
TACTCACTGCGTGCCAATAGATTTGGAACCATGGCAACAATCTGGCTATTTGGCAATTTT
GCGCAATCTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGGTT
TTCTCAAAATTAGCTGAGCAGAGGTTCCCTAGTGAGTTTGAACTGCGGGATCTCATCAAC
AGCAGATTACCAGATTCTCTGGTTGGGAAAAATGTGGGAAAATCCTTGTCTTAG

Peptide Sequence

PEP ID

Os05t0467300-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:22932713:22935696:1 gene:Os05g0467300 transcript:Os05t0467300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SelT/selW/selH selenoprotein family protein. (Os05t0467300-01)
Sequence

MDRVQLLLVGLPALLFLSDLSHIFAPPPPHLRHPHHHPPHHHPHPPHHHPPHHPHPPHHP
HPPHHPHPPHHPHPPHHHPHPHPDPAAEAIQANVDGAGYGTTVELQFCASCSYKGTAMTM
KRMLETSFPGIHVILHNYPPPFPKRVLGKLVPILQVGAIATIMAGDHIFPRLGMVPPPWY
YSLRANRFGTMATIWLFGNFAQSFLQSSGAFEVYCNGDLVFSKLAEQRFPSEFELRDLIN
SRLPDSLVGKNVGKSLS

Transcript Sequence

Transcript ID

Os05t0467300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:22932713:22935696:1 gene:Os05g0467300 gene_biotype:protein_coding transcript_biotype:protein_coding description:SelT/selW/selH selenoprotein family protein. (Os05t0467300-01)
Sequence

GGGTCGTCCTCCTTCCGTTCCGCGTCCTCTCAAAAGGTTGGGAGGAGGAGGAGGCGACGC
GGAGCGCAGCAGTGTGAGTAGTGGTAAGCCATGGACCGCGTGCAGCTCCTCCTCGTCGGT
CTCCCCGCCCTCCTCTTCCTCTCCGACCTCTCCCACATCTTCGCGCCGCCGCCGCCGCAT
CTCCGGCACCCCCACCACCACCCGCCGCACCACCATCCCCATCCGCCTCACCACCACCCC
CCGCATCACCCCCACCCGCCTCACCACCCGCATCCGCCGCATCACCCCCACCCGCCTCAC
CACCCGCATCCGCCGCACCATCACCCCCACCCTCACCCCGATCCCGCCGCGGAGGCCATA
CAGGCTAACGTTGATGGAGCTGGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCC
TGCTCGTACAAGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGC
ATTCATGTTATCTTGCACAATTACCCTCCACCCTTCCCCAAACGTGTACTTGGCAAACTT
GTGCCAATTCTTCAGGTTGGAGCCATTGCAACAATAATGGCTGGTGATCATATTTTCCCC
AGACTTGGAATGGTTCCACCCCCATGGTACTACTCACTGCGTGCCAATAGATTTGGAACC
ATGGCAACAATCTGGCTATTTGGCAATTTTGCGCAATCTTTCCTACAAAGTTCTGGTGCC
TTTGAAGTTTACTGCAATGGAGATTTGGTTTTCTCAAAATTAGCTGAGCAGAGGTTCCCT
AGTGAGTTTGAACTGCGGGATCTCATCAACAGCAGATTACCAGATTCTCTGGTTGGGAAA
AATGTGGGAAAATCCTTGTCTTAGACAATGACATTGGAATATCACATGCCAATGCGACAT
CTTGCTATCAAGGTAGTACTATATTGTTTGCTGTTTGACGTCGAGCAGTTTGGAAGCTCT
GCAGCTTGTCTGTGAACACTACTATTCAATTAAATGGCTTGTAAAGGATAACCTAGAGTG
AGATAGTGACTCAATTGTATGAACTTATTAGTTATGCCACAAAAAAAATCATCATTTCCT
GTTTATTTTCTG