Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0463800-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:22770094:22774082:-1 gene:Os05g0463800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to Nuclear transcription factor Y subunit B-3. (Os05t0463800-01);CCAAT-box binding transcription factor, Chloroplast biogenesis (Os05t0463800-02)
Sequence	ATGGCGGATGGGCCGGGGAGCCCGGGGGGAGGAGGGGGGAGCCACGAGAGCGGGAGCCCG AGGGGGGGAGGGGGAGGAGGGGGAGGTGGGGGTGGGGGTGGGGGGGTGAGGGAGCAGGAC AGGTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAGGCCATCCCGGCCAACGGG AAGATCGCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTC ATCACCAGCGAGGCGAGCGATAAATGCCAGAGGGAGAAGCGCAAGACCATCAACGGCGAC GACTTGCTGTGGGCGATGGCCACGCTGGGCTTCGAGGACTACATCGAGCCCCTCAAGGTC TACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGTAAATTAACTGCAAAGGCTGGTGAT GGCTCTGTGAAAAAGGATGTACTTGGTTCTCATGGAGGAAGCAGTTCAAGTGCCCAAGGG ATGGGCCAACAAGCAGCATACAATCAAGGAATGGGTTATATGCAACCTCAGTACCATAAT GGGGATGTCTCAAACTGA

Peptide Sequence

PEP ID	Os05t0463800-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:22770094:22774082:-1 gene:Os05g0463800 transcript:Os05t0463800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to Nuclear transcription factor Y subunit B-3. (Os05t0463800-01);CCAAT-box binding transcription factor, Chloroplast biogenesis (Os05t0463800-02)
Sequence	MADGPGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANG KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKV YLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQYHN GDVSN

Transcript Sequence

Transcript ID	Os05t0463800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:22770094:22774082:-1 gene:Os05g0463800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Similar to Nuclear transcription factor Y subunit B-3. (Os05t0463800-01);CCAAT-box binding transcription factor, Chloroplast biogenesis (Os05t0463800-02)
Sequence	ACCCCGACCCCTTCAATCGCGCCCGCCTCAGCCGCCTTCTCTTCTCCAGCGTCCGATCTC CCCCTCTCGCCTCTCCGCCTCACCTCCGCTCCGCTTCCCACCCCCGCTTCCTCTCTCTCT CCTCTCCCCCTCTCTCTCTCTCTCTCTCCTCCTCGCTTCACCACCTCGCGCCCAACCCCC CTCTCTCTCCTCTCCACGTCGCGCCCTCTCCGCGCGCGCCCGCGCTTCTATATAAGGAGG GGGGAGGTGGGATGGCGGATGGGCCGGGGAGCCCGGGGGGAGGAGGGGGGAGCCACGAGA GCGGGAGCCCGAGGGGGGGAGGGGGAGGAGGGGGAGGTGGGGGTGGGGGTGGGGGGGTGA GGGAGCAGGACAGGTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAGGCCATCC CGGCCAACGGGAAGATCGCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGT TCATCTCCTTCATCACCAGCGAGGCGAGCGATAAATGCCAGAGGGAGAAGCGCAAGACCA TCAACGGCGACGACTTGCTGTGGGCGATGGCCACGCTGGGCTTCGAGGACTACATCGAGC CCCTCAAGGTCTACCTGCAGAAGTACAGAGAGATGGAGGGTGATAGTAAATTAACTGCAA AGGCTGGTGATGGCTCTGTGAAAAAGGATGTACTTGGTTCTCATGGAGGAAGCAGTTCAA GTGCCCAAGGGATGGGCCAACAAGCAGCATACAATCAAGGAATGGGTTATATGCAACCTC AGTACCATAATGGGGATGTCTCAAACTGAAGATAGGACCTTTTCATGCAACTGTTGCTAG CGCAGGTGGATTTTATTTGGTGCTGCAGTCGTTAGCTAATATATATACCTACACCTCATG GTGAGCAGTGAAGGAAGTAACTTGCTACCACCTCTAGGTCCCATGTTTGTCAACCAGGAA CTGATGCTGCTTGGAAGCGTCGAGCCAAGGCTGCTTCTCAGATGTAAATTACTCCCCGTG AGGATAGTTTCGGTTCGTGGTCTAGCTCTGTTGTTGTATGTATATTCAGGATAATTTAAC AATTGGTCTTTGGCTGTCATTCGGTTCCATATAATCTGTATTGGGAGGCATAAATATTCA TGTTGTATTTCGTCCTGAACTAGCGTGTTGTACTATTGAGAAATAGATGCTCTCTGTAAT GGTAGCAATTTTACTCTGATTCCC