Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0460600-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:22625667:22629028:-1 gene:Os05g0460600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RIBA3 description:Similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase- like protein (Fragment). (Os05t0460600-01);Similar to riboflavin biosynthesis protein ribAB. (Os05t0460600-02)
Sequence	ATGGACCGTGTTCTTCTGAGCTCTCAATTGTCATCACAAACGGTTGTTAACACAAGGGTT CAACAAGGAAGCGGTGGTATCAACAGCATAGGATTTGCTGTTATCAGAAAGGGGAGCTTA AAATTGAGATGTTATGCAATTGGTGGACTTGGGGGAGGAGAGAATTTGAATGATCCTTTA AAGGAAAGCAATAATGGACCTGTTTTGCAAGGATTCAATGGATCTAGTGCTTCCTTTCGG ACTGTTGGTGCTAAAATCACTCAGGAAACTGGTGATTTCTTTGTTAGCGATGCAGAGGGT GACCCAGACAAACCAACTGATGGTTTTTCCTCTATTGATGAGGCTATAGGCGCATTGCAT GAAGGAAAGTTTGTTATTGCTGTAGATGATGAAAGCGGTGATAATGAAGGGGATCTTGTC ATGGCAGCTACGCTGGCAGACCCAGAATCTATTGCATTCATGATCAGGAATGGTTCTGGG ATCATCTCAGTGGGCATGAAGGAAGAGGACTTAACAAGATTGATGATTCCTATGATGTCT CCAATTGCAGAAATTGAGGATATTTCAGCTGCTGCTTCCACAGTAACAGTGGATGCCAGA GTGGGCATATCAACCGGCGTCTCGGCTGCAGATAGGGCAAAAACGATTTTTACTCTAGCC TCCCCTGATTCTAAGCCAACTGACCTCAGAAGACCAGGCCATATATTCCCTCTAAAATAC CGAAACGGTGGTGTGCTAAAAAGAGCTGGACATACTGAGGCATCCGTCGATCTTGTCGCG TTGGCTGGCTTGCGCCCTGTGTCTGTCCTGTCAACCGTCATCAACCCAGTGGATGGTTCA ATGGCAGGAATGCCAGTGCTGAAACAGATGGCTTTGGAGCATGATATCCCAATTGTTTCA ATCGCTGATCTCATCCGGTATAGAAGGAAGAGGGAGAAGCTGGTGGAACTGATTGCTGTA TCTCGTTTGCCGACGAAATGGGGCCTTTTCCGAGCTTACTGCTACCAATCCAAGCTTGAT GGAACCGAGCACATTGCTGTTGCAAAGGGCGACATCGGCGACGGCGAGGACGTCTTGGTG AGGGTCCATTCCGAGTGCCTGACCGGCGACATCCTCGGCTCCGCCCGCTGCGACTGCGGC AACCAGCTGGACCTGGCGATGCAGCTCATCGACAAGGCCGGCCGCGGCGTCCTCGTCTAC CTCCGCGGCCACGAGGGCCGCGGCATCGGCCTCGGCCAGAAGCTCCGCGCCTACAACCTC CAGGACGACGGCCACGACACCGTCCAGGCCAACGTCGAGCTCGGCCTCGCCGTCGACTCC CGCGAGTACGGCATCGGCGCCCAGATTCTGCGGGACATGGGGGTGCGCACGATGCGGCTG ATGACGAACAACCCGGCAAAGTTCGTCGGGCTCAAGGGCTACGGGCTCGCCGTCGTCGGC AGGGTTCCGGTGATCTCCCCCATCACCAAGGAGAACCAGAGGTACCTCGAGACGAAGCGC ACCAAGATGGGCCATGTCTACGGCTCCGACCTCCCCGGCAACGTCCCGGAGGAATTCCTC AACCCGGACGACATCGCCGGAGACCAAGACGAAGACGACACCCACAACTGA

Peptide Sequence

PEP ID	Os05t0460600-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:22625667:22629028:-1 gene:Os05g0460600 transcript:Os05t0460600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RIBA3 description:Similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase- like protein (Fragment). (Os05t0460600-01);Similar to riboflavin biosynthesis protein ribAB. (Os05t0460600-02)
Sequence	MDRVLLSSQLSSQTVVNTRVQQGSGGINSIGFAVIRKGSLKLRCYAIGGLGGGENLNDPL KESNNGPVLQGFNGSSASFRTVGAKITQETGDFFVSDAEGDPDKPTDGFSSIDEAIGALH EGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMS PIAEIEDISAAASTVTVDARVGISTGVSAADRAKTIFTLASPDSKPTDLRRPGHIFPLKY RNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSMAGMPVLKQMALEHDIPIVS IADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGEDVLV RVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRGIGLGQKLRAYNL QDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYGLAVVG RVPVISPITKENQRYLETKRTKMGHVYGSDLPGNVPEEFLNPDDIAGDQDEDDTHN

Transcript Sequence

Transcript ID	Os05t0460600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:22625667:22629028:-1 gene:Os05g0460600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RIBA3 description:Similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase- like protein (Fragment). (Os05t0460600-01);Similar to riboflavin biosynthesis protein ribAB. (Os05t0460600-02)
Sequence	GAGGAGCGTGGATCGGTTTTACCGGGATCACCAAATGGACCGTGTTCTTCTGAGCTCTCA ATTGTCATCACAAACGGTTGTTAACACAAGGGTTCAACAAGGAAGCGGTGGTATCAACAG CATAGGATTTGCTGTTATCAGAAAGGGGAGCTTAAAATTGAGATGTTATGCAATTGGTGG ACTTGGGGGAGGAGAGAATTTGAATGATCCTTTAAAGGAAAGCAATAATGGACCTGTTTT GCAAGGATTCAATGGATCTAGTGCTTCCTTTCGGACTGTTGGTGCTAAAATCACTCAGGA AACTGGTGATTTCTTTGTTAGCGATGCAGAGGGTGACCCAGACAAACCAACTGATGGTTT TTCCTCTATTGATGAGGCTATAGGCGCATTGCATGAAGGAAAGTTTGTTATTGCTGTAGA TGATGAAAGCGGTGATAATGAAGGGGATCTTGTCATGGCAGCTACGCTGGCAGACCCAGA ATCTATTGCATTCATGATCAGGAATGGTTCTGGGATCATCTCAGTGGGCATGAAGGAAGA GGACTTAACAAGATTGATGATTCCTATGATGTCTCCAATTGCAGAAATTGAGGATATTTC AGCTGCTGCTTCCACAGTAACAGTGGATGCCAGAGTGGGCATATCAACCGGCGTCTCGGC TGCAGATAGGGCAAAAACGATTTTTACTCTAGCCTCCCCTGATTCTAAGCCAACTGACCT CAGAAGACCAGGCCATATATTCCCTCTAAAATACCGAAACGGTGGTGTGCTAAAAAGAGC TGGACATACTGAGGCATCCGTCGATCTTGTCGCGTTGGCTGGCTTGCGCCCTGTGTCTGT CCTGTCAACCGTCATCAACCCAGTGGATGGTTCAATGGCAGGAATGCCAGTGCTGAAACA GATGGCTTTGGAGCATGATATCCCAATTGTTTCAATCGCTGATCTCATCCGGTATAGAAG GAAGAGGGAGAAGCTGGTGGAACTGATTGCTGTATCTCGTTTGCCGACGAAATGGGGCCT TTTCCGAGCTTACTGCTACCAATCCAAGCTTGATGGAACCGAGCACATTGCTGTTGCAAA GGGCGACATCGGCGACGGCGAGGACGTCTTGGTGAGGGTCCATTCCGAGTGCCTGACCGG CGACATCCTCGGCTCCGCCCGCTGCGACTGCGGCAACCAGCTGGACCTGGCGATGCAGCT CATCGACAAGGCCGGCCGCGGCGTCCTCGTCTACCTCCGCGGCCACGAGGGCCGCGGCAT CGGCCTCGGCCAGAAGCTCCGCGCCTACAACCTCCAGGACGACGGCCACGACACCGTCCA GGCCAACGTCGAGCTCGGCCTCGCCGTCGACTCCCGCGAGTACGGCATCGGCGCCCAGAT TCTGCGGGACATGGGGGTGCGCACGATGCGGCTGATGACGAACAACCCGGCAAAGTTCGT CGGGCTCAAGGGCTACGGGCTCGCCGTCGTCGGCAGGGTTCCGGTGATCTCCCCCATCAC CAAGGAGAACCAGAGGTACCTCGAGACGAAGCGCACCAAGATGGGCCATGTCTACGGCTC CGACCTCCCCGGCAACGTCCCGGAGGAATTCCTCAACCCGGACGACATCGCCGGAGACCA AGACGAAGACGACACCCACAACTGAATGCAACAACAAAATTCACAACCACAGATTCTCCA CATCTCATTTTGTGATCAAATTGCATCTCAAACTGCACCGATCTTGTTATACTAGTAACA AATCTTGATTTGGAACCAAGC