Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0458300-00
CDS Infomation	cds chromosome:IRGSP-1.0:5:22499463:22503475:-1 gene:Os05g0458300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 13 description:Similar to L-ascorbate oxidase. (Os05t0458300-00)
Sequence	ATGGGTAGTAGTACGGGTCGTCATCTCCTTTGTTTGGCCTCCCCTGCATGCCTCCTCTTC GCCGCCGCCGTCCTCCTCGCTATGCCGGGCCTCACCGCCGCCCGCACCCGCCGCTACTCC TTCAATGTGACAATGGCGACGGTGACGCGGCTGTGCGTGACGAAGAGCGTCCCCACGGTG AACGGCCAGTTCCCGGGGCCGAAGCTCGTCGTGCGGGAGGGCGACACCCTCGTGATCAGG GTCACCAACAACATCAACAACAACGTCACCTTCCACTGGCACGGGATTCGGCAGGTGCGG AGCGGGTGGGCGGACGGGCCGGCGTACATCACGCAGTGTCCGATCCGCTCCGGGGGAAGC TACGTGTACAGGTTCACCGTGACGGGGCAGCGGGGGACGCTGTGGTGGCACGCGCACTTC TCCTGGCTCCGCGCCACGCTCTACGGCCCGCTCGTCATCCTCCCGCCCCGCGGCGTCGCC TACCCGTTCCCCAAGCCCCATCGCGAGGTGCCCCTCCTGCTCGGTGAGTGGTTCAACGCC GACCCGGAGGCCGTGATCAAGCAGGCCCTGCAGACGGGAGGAGGGCCCAACGTCTCCGAC GCCTACACGTTCAACGGCCTCCCTGGCCCAACCTACAACTGCTCCTCCTCCAACGACACG TTCAAGCTGAGGGTGAGGCCCGGGAAGACGTACCTGCTGCGGCTGATCAACGCGGCGCTC AACGACGAGCTCTTCTTCGGGGTGGCCAACCACACGCTGATGGTGGTGCAGGCGGACGCC AGCTACGTCAAGCCGTTCGCCGCCACGGCGCTCGTCATCTCGCCGGGGCAGACCATGGAC GTGCTCCTCACTGCGGCGGCCAACAACCCGCCGTCCCGCTCCTTCGCCATCGCCGTCGCG CCGTACACCAACACCGTCGGCACGTTCGACAACACCACCGCCGTCGCCGTGCTCGAGTAC TACGGCGCCGCGACGTCCGCCGCCGCGCTCCGGAGCCTCCCGCTGCCGTCCCTCCCGGCG TACAACGACACCGGCGCGGTGGCCAACTTCTCGGCGAGCTTCCGGAGCCTCGCGAGCGCG CAGTACCCGGCGCGGGTGCCGCGGACGGTGGACAGGCACTTCTTCTTCGCCGTCGGGCTC GGCGCCGACCCGTGCCAGAGCCCGGTGAACGGGACGTGCCAGGGGCCCAACAACACCAGG TTCGCGGCGTCCATGAACAACGTGTCGTTCGTGATGCCCAGGACGTCGCTCCTCCAGGCG CACTACCAGCGGCGGTACAACGGTGTGCTCGCGGCCAACTTCCCGGCGGCGCCGCGGACG CCGTTCAACTACACCGGCACGCCGCCGAACAACACGTTCGTGACCCACGGCACCAGGGTG GTGCCGCTCAGTTTCAACACAACCGTGGAGGTGGTGCTGCAGGACACCAGCATCCTCGGC GCCGAGAGCCACCCGCTGCACCTGCACGGCTACGACTTCTACGTCGTCGGCACCGGGTTC GGCAACTACGACGCCAGCAATGACACCGCCAAGTACAACCTCGTCGACCCCGTGCAGCGG AACACCATCAGCGTGCCCACCGCCGGCTGGGTCGCCATCCGCTTCGTCGCCGACAACCCC GGTGTTTGGATCATGCATTGCCATTTAGACGTGCACCTGAGCTGGGGCCTGTCCATGGCG TGGCTCGTCAACGACGGGCCGCTGCCGAATCAGAAGCTGCCGCCGCCGCCGTCCGATATC CCCATGTGCTCGTAG

Peptide Sequence

PEP ID	Os05t0458300-00
PEP Infomation	pep chromosome:IRGSP-1.0:5:22499463:22503475:-1 gene:Os05g0458300 transcript:Os05t0458300-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 13 description:Similar to L-ascorbate oxidase. (Os05t0458300-00)
Sequence	MGSSTGRHLLCLASPACLLFAAAVLLAMPGLTAARTRRYSFNVTMATVTRLCVTKSVPTV NGQFPGPKLVVREGDTLVIRVTNNINNNVTFHWHGIRQVRSGWADGPAYITQCPIRSGGS YVYRFTVTGQRGTLWWHAHFSWLRATLYGPLVILPPRGVAYPFPKPHREVPLLLGEWFNA DPEAVIKQALQTGGGPNVSDAYTFNGLPGPTYNCSSSNDTFKLRVRPGKTYLLRLINAAL NDELFFGVANHTLMVVQADASYVKPFAATALVISPGQTMDVLLTAAANNPPSRSFAIAVA PYTNTVGTFDNTTAVAVLEYYGAATSAAALRSLPLPSLPAYNDTGAVANFSASFRSLASA QYPARVPRTVDRHFFFAVGLGADPCQSPVNGTCQGPNNTRFAASMNNVSFVMPRTSLLQA HYQRRYNGVLAANFPAAPRTPFNYTGTPPNNTFVTHGTRVVPLSFNTTVEVVLQDTSILG AESHPLHLHGYDFYVVGTGFGNYDASNDTAKYNLVDPVQRNTISVPTAGWVAIRFVADNP GVWIMHCHLDVHLSWGLSMAWLVNDGPLPNQKLPPPPSDIPMCS

Transcript Sequence

Transcript ID	Os05t0458300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:22499463:22503475:-1 gene:Os05g0458300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 13 description:Similar to L-ascorbate oxidase. (Os05t0458300-00)
Sequence	TCAATCGATCGATCAAGCAGCTAGCTAGCTTGATTACAGCTGCTGCAGGAGAAGATCGAT CACAATGGGTAGTAGTACGGGTCGTCATCTCCTTTGTTTGGCCTCCCCTGCATGCCTCCT CTTCGCCGCCGCCGTCCTCCTCGCTATGCCGGGCCTCACCGCCGCCCGCACCCGCCGCTA CTCCTTCAATGTGACAATGGCGACGGTGACGCGGCTGTGCGTGACGAAGAGCGTCCCCAC GGTGAACGGCCAGTTCCCGGGGCCGAAGCTCGTCGTGCGGGAGGGCGACACCCTCGTGAT CAGGGTCACCAACAACATCAACAACAACGTCACCTTCCACTGGCACGGGATTCGGCAGGT GCGGAGCGGGTGGGCGGACGGGCCGGCGTACATCACGCAGTGTCCGATCCGCTCCGGGGG AAGCTACGTGTACAGGTTCACCGTGACGGGGCAGCGGGGGACGCTGTGGTGGCACGCGCA CTTCTCCTGGCTCCGCGCCACGCTCTACGGCCCGCTCGTCATCCTCCCGCCCCGCGGCGT CGCCTACCCGTTCCCCAAGCCCCATCGCGAGGTGCCCCTCCTGCTCGGTGAGTGGTTCAA CGCCGACCCGGAGGCCGTGATCAAGCAGGCCCTGCAGACGGGAGGAGGGCCCAACGTCTC CGACGCCTACACGTTCAACGGCCTCCCTGGCCCAACCTACAACTGCTCCTCCTCCAACGA CACGTTCAAGCTGAGGGTGAGGCCCGGGAAGACGTACCTGCTGCGGCTGATCAACGCGGC GCTCAACGACGAGCTCTTCTTCGGGGTGGCCAACCACACGCTGATGGTGGTGCAGGCGGA CGCCAGCTACGTCAAGCCGTTCGCCGCCACGGCGCTCGTCATCTCGCCGGGGCAGACCAT GGACGTGCTCCTCACTGCGGCGGCCAACAACCCGCCGTCCCGCTCCTTCGCCATCGCCGT CGCGCCGTACACCAACACCGTCGGCACGTTCGACAACACCACCGCCGTCGCCGTGCTCGA GTACTACGGCGCCGCGACGTCCGCCGCCGCGCTCCGGAGCCTCCCGCTGCCGTCCCTCCC GGCGTACAACGACACCGGCGCGGTGGCCAACTTCTCGGCGAGCTTCCGGAGCCTCGCGAG CGCGCAGTACCCGGCGCGGGTGCCGCGGACGGTGGACAGGCACTTCTTCTTCGCCGTCGG GCTCGGCGCCGACCCGTGCCAGAGCCCGGTGAACGGGACGTGCCAGGGGCCCAACAACAC CAGGTTCGCGGCGTCCATGAACAACGTGTCGTTCGTGATGCCCAGGACGTCGCTCCTCCA GGCGCACTACCAGCGGCGGTACAACGGTGTGCTCGCGGCCAACTTCCCGGCGGCGCCGCG GACGCCGTTCAACTACACCGGCACGCCGCCGAACAACACGTTCGTGACCCACGGCACCAG GGTGGTGCCGCTCAGTTTCAACACAACCGTGGAGGTGGTGCTGCAGGACACCAGCATCCT CGGCGCCGAGAGCCACCCGCTGCACCTGCACGGCTACGACTTCTACGTCGTCGGCACCGG GTTCGGCAACTACGACGCCAGCAATGACACCGCCAAGTACAACCTCGTCGACCCCGTGCA GCGGAACACCATCAGCGTGCCCACCGCCGGCTGGGTCGCCATCCGCTTCGTCGCCGACAA CCCCGGTGTTTGGATCATGCATTGCCATTTAGACGTGCACCTGAGCTGGGGCCTGTCCAT GGCGTGGCTCGTCAACGACGGGCCGCTGCCGAATCAGAAGCTGCCGCCGCCGCCGTCCGA TATCCCCATGTGCTCGTAGTCTACGGTGCGGATTGATCAGCGGTGTTTTTGGTCAGTGGG TGCTTGTACAAGTTCGTGGCGTGTGGAGAGGTATATCGACTCTCGATCGGTTTGGGATGA AAATCGTGTACCCATCTTGTGCCTGTTGGTTTGTGCTCTGATTTGTCTCTCAAACTAAGC TAGAGGTAGGGACAAGATCGATGTAACCTCACATTGGATGGTGTTGTGCAATTCATGTTT TTATTCTTTTATTCTACTT