Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0455200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:22354150:22358544:1 gene:Os05g0455200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING 5 description:Similar to Homeodomain protein JUBEL2. (Os05t0455200-01);Similar to QSH-1. (Os05t0455200-02)
Sequence	ATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGAGGCGGCGAGCATCAGCAT CAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGGCAGCTGTACCACGTGCCG CAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCACCCGGCGGAGTCGCCGCCG CCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTACTCCTACGCGTCGTCCTCG TCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAGTTGGTGGCGCATGGGATG CCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGCCAGAACTTCGCGCTGTCG CTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGGCAGTTTGGCGGCGGCGGC GGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGCTACGCCGCCGTGCTCGGG CGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAGATCTGCGACGTCGGCGGC CGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTCGACGTAGACGCCATGGAC GCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGCGCCGTCGCGGACGCGGTC ACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTCATCTCGCTTATGGAAGAC GTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCTGTAGTATCGTCCTTTGAG ACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATGGCTCTTAGGACAATGTCG AAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTGCGCAATACGGGCAAGGGT GCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTTGGGCTTATGGGCGGCGGC GCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAACCTCACAACATATGGCGC CCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGTGCATGGCTATTCGAACAC TTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTTGCTAAACAGACAGGATTA ACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTTAGGCTCTGGAAGCCAATG GTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAGAATCCGTCTCTTGACAAG AATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGCAGCGGGAAGCCCTGTGAT CCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGGAATCACAGCATCTCCGCC TCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGACATCTCCGGTCAGGTGAGC TTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATGGCGCACCACCACCAACCT GACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTCTCACTCACCCTTGGCCTT CACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAAT CTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTACGTGATGAGCTCATTTGGT GGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGACTTTGTTGGT TGA

Peptide Sequence

PEP ID	Os05t0455200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:22354150:22358544:1 gene:Os05g0455200 transcript:Os05t0455200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING 5 description:Similar to Homeodomain protein JUBEL2. (Os05t0455200-01);Similar to QSH-1. (Os05t0455200-02)
Sequence	MSSAAGGGGGYGGGGGEHQHQQQQHHLLLGQAAGQLYHVPQHSRREKLRFPPDHPAESPP PPPPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALS LSSASSNPPPTPRRQFGGGGGGGGAAGPYGPFTGYAAVLGRSRFLGPAQKLLEEICDVGG RPAQLDRGSDEGLLDVDAMDAAGSVDHEMDGSDRAVADAVTVSGAEQQWRKTRLISLMED VCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQLRNTGKG ATKDGLGKEDTTNFGLMGGGAGLLRGNNVNSFSQPHNIWRPQRGLPERAVSVLRAWLFEH FLHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVRLWKPMVEEIHNLEMRQLQKNPSLDK NQLSMQHTQHSSDSSGKPCDPSNSLQGQSSSMTRNHSISASRHIEDGLSQMPHDISGQVS FAYNGLAAHHSIAMAHHHQPDLIGTGGAANAGGVSLTLGLHQNNNRAYIAEPLPAALPLN LAHRFGLEDVSDAYVMSSFGGQDRHFTKEIGGHLLHDFVG

Transcript Sequence

Transcript ID	Os05t0455200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:22354150:22358544:1 gene:Os05g0455200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHATTERING 5 description:Similar to Homeodomain protein JUBEL2. (Os05t0455200-01);Similar to QSH-1. (Os05t0455200-02)
Sequence	ACCCATCTGCTGCAGCTGCGCACCTTTAATTTGCAGAAAGAAAGAAAGAAAGAAAGAAAG GAAAGCAAGGCCCCCCCGAGCGCAACAGCTAGCCCAACACACCTCCTCCATCACCACCGA GAAGGCAACGCATATCAAAAGCGCGGGCGCAAAGCAAAGATAACATCAGATCAGGTCGGC GCCCCCCGCTCCCGGCTGCCGCAAAGCCCACCCGATCGATCGATCGACGCCTCGTTCTCC TCCTCCTCCGAGGCTACTCTCTGCAGGGCGCTCGCTTACGTCTGCCTCTGCGTACGTGCA CCGCCCAGCGCGGGCGCCATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGA GGCGGCGAGCATCAGCATCAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGG CAGCTGTACCACGTGCCGCAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCAC CCGGCGGAGTCGCCGCCGCCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTAC TCCTACGCGTCGTCCTCGTCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAG TTGGTGGCGCATGGGATGCCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGC CAGAACTTCGCGCTGTCGCTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGG CAGTTTGGCGGCGGCGGCGGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGC TACGCCGCCGTGCTCGGGCGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAG ATCTGCGACGTCGGCGGCCGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTC GACGTAGACGCCATGGACGCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGC GCCGTCGCGGACGCGGTCACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTC ATCTCGCTTATGGAAGACGTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCT GTAGTATCGTCCTTTGAGACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATG GCTCTTAGGACAATGTCGAAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTG CGCAATACGGGCAAGGGTGCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTT GGGCTTATGGGCGGCGGCGCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAA CCTCACAACATATGGCGCCCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGT GCATGGCTATTCGAACACTTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTT GCTAAACAGACAGGATTAACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTT AGGCTCTGGAAGCCAATGGTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAG AATCCGTCTCTTGACAAGAATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGC AGCGGGAAGCCCTGTGATCCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGG AATCACAGCATCTCCGCCTCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGAC ATCTCCGGTCAGGTGAGCTTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATG GCGCACCACCACCAACCTGACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTC TCACTCACCCTTGGCCTTCACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCG GCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTAC GTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTG CTCCATGACTTTGTTGGTTGAAGAGCAGATATGATTGTTTCACCAAGGAGATCGGTGGTG ATTATTGTAGGATGCAGATGTATGATCTACCTATATTGTAGTTGGAAGTAGGAGGTGAAG AAAAGAGGGGCATTGGCACGCCTGTCGTAGATCCACGAATGCTTGTCGATATTTGACATT GTGGGGCTATAGAGAGCATATGACTATACCTTTGAAGACCTGTTTGTAGTGTTGTTCCCT ATTTGTTCTGATCCGCGGTTAAGCCGTGTTAACCCTGTACTATTCATCTGACTTGCAAAT GTGGTTGCTCCCACTCTGGCAAATAAAGGGTGC