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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0452900-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:22214698:22219616:-1 gene:Os05g0452900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phosphatidic acid phosphatase-related / PAP2-related. (Os05t0452900-01);Similar to Phosphatidic acid phosphatase-like protein. (Os05t0452900-02)
Sequence

ATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACG
TCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTT
CAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTT
CTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGT
GAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATT
TATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTT
GCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTAC
CATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTG
CTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCT
CACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTT
GTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGC
AAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTC
GTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTG
AGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAG
TTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAG
ATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCT
GTCAATGGTGGTACATGA

Peptide Sequence

PEP ID

Os05t0452900-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:22214698:22219616:-1 gene:Os05g0452900 transcript:Os05t0452900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phosphatidic acid phosphatase-related / PAP2-related. (Os05t0452900-01);Similar to Phosphatidic acid phosphatase-like protein. (Os05t0452900-02)
Sequence

MTIYIAREASKVWRKVTTETSVELSLLREKWGLLLAGIVFQYIHGLAARGVHYLHRPGPL
LQDLGFMALPEFGQDKGYLSESIFASIFASFVLWTFHPFIYHSKRFYTVLIWRRVLAFLV
ASQVLRIITFYSTQLPGPNYHCREGSKLATLPPPNNVFEVLLINFPRGVLFGCGDLIFSS
HMIFTLVFVRTYHKYGSKRFVKLLAWFMAIVQSLLIIASRKHYSVDVVVAWYTVNLVVFF
VDNKLPEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKLLNGNHGDPTDRRQRAQ
MNGRHDEDINHAHSTLSDAAVNGGT

Transcript Sequence

Transcript ID

Os05t0452900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:22214698:22219616:-1 gene:Os05g0452900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to phosphatidic acid phosphatase-related / PAP2-related. (Os05t0452900-01);Similar to Phosphatidic acid phosphatase-like protein. (Os05t0452900-02)
Sequence

TTTTCTCGATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTC
TCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCG
CCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGA
TTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCT
GGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCA
TGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCG
CGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAG
GTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTC
GCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCAT
CGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGAC
AAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACT
TTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTG
CTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTT
CCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAAC
AATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGAT
CTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATAT
GGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTT
ATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAAT
TTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTA
CCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGC
AGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGG
CGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACG
CTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAG
TTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCC
CGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATT
ACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGC
AGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCT