Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0452800-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:22208601:22212202:1 gene:Os05g0452800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0452800-01)
Sequence

ATGGCGGGCGGCGGCGGGCAGTCGGCGATCGCCGCTGAGGACGACGACCTCGAGCGCGGC
GCGGAGCGCGACGAGGAGGAGGAGGAGGGGAGCCAATACTTCACCGACGCGGAGGACCAC
CAGTCGTGGGCGTCGCACTCGCGCCACAACTCCACCGCCTACGAGGACTACATCTCCACC
TGCGCCTCCGTCCGCGCGAGCTCCTACGACGGCGAGGCGGAGGAGGAGGAGGATGCCGGC
GGCGGCGGCGGCGGCGTCGAGCACCACCGCAGGAAGTCGTCGTGCGTGTCGGAGTGCTCG
CTGGACGACGTCGACCTGGAGGCCGGGCTGGCCGAGGTCATCAAGGGCAGCCCCGAGAAG
GCGGAGAGGTGCTGCCGCATTTGCCACCTTGGCCTCGAGACCGCGGCGGCGGAGTCCGGC
GCCGGCATCACGCTCGGCTGCTCCTGCAAGGGCGACCTCTCCTACTCCCACAAGCAGTGC
GCCGAGACATGGTTCAAGATTAGAGGCAACAAGATATGTGAAATCTGTAGCTCTACCGCA
TGCAATGTGGTAGGCATTGGTGATTCAGAATCCGTTGAGCAATGGAATGAATCGAACAGC
ACAGCACCTGCACAAGCACCACCAGCTGAAACTCAGAGATTTTGGCAAGGGCATCGGTTC
CTGAACTTTCTTCTTGCTTGCATGGTTTTCGCCTTTGTTATCTCATGGCTCTTTCATTTC
AACGTCCCGGGCTAA

Peptide Sequence

PEP ID

Os05t0452800-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:22208601:22212202:1 gene:Os05g0452800 transcript:Os05t0452800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0452800-01)
Sequence

MAGGGGQSAIAAEDDDLERGAERDEEEEEGSQYFTDAEDHQSWASHSRHNSTAYEDYIST
CASVRASSYDGEAEEEEDAGGGGGGVEHHRRKSSCVSECSLDDVDLEAGLAEVIKGSPEK
AERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTA
CNVVGIGDSESVEQWNESNSTAPAQAPPAETQRFWQGHRFLNFLLACMVFAFVISWLFHF
NVPG

Transcript Sequence

Transcript ID

Os05t0452800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:22208601:22212202:1 gene:Os05g0452800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0452800-01)
Sequence

CTCTTTTCCCCTTCACTCACACACAGTCACACTGTGCGAGCCTGTGTGGGACTGTGGGTG
TTGGCCATTCCAGTACAATCCGTTCTCTTTATTCCTCCCTCTCCTGCTTGTCTCGTTGCG
TGGCCGTGGCCTTGTGCGGTTTTATGGATCAAGAAACCTCACGAGAACCCCGACGCTTCG
GCCGTCTGGTGGCGCGGCGCTAGCCATCTCTTTGGATCGCTCCTCGCGATCGCATTGCGG
CCGCGTTCTTTGATTTTTGGTTTTTTTTTTGTCCGGTCAAAGGTTGGTTCTTGGTGGTGT
AGATTCGGAGTGGCGTGTCGTGGCGGCGGTTTTTTGTTGTTGTTGTTGTTGTTGGTAGAT
ACTGGTTCGGATTGTTTCTTGGAGGAGGAGGAATTTCGCGTCTTGGAGCAATGGCGGGCG
GCGGCGGGCAGTCGGCGATCGCCGCTGAGGACGACGACCTCGAGCGCGGCGCGGAGCGCG
ACGAGGAGGAGGAGGAGGGGAGCCAATACTTCACCGACGCGGAGGACCACCAGTCGTGGG
CGTCGCACTCGCGCCACAACTCCACCGCCTACGAGGACTACATCTCCACCTGCGCCTCCG
TCCGCGCGAGCTCCTACGACGGCGAGGCGGAGGAGGAGGAGGATGCCGGCGGCGGCGGCG
GCGGCGTCGAGCACCACCGCAGGAAGTCGTCGTGCGTGTCGGAGTGCTCGCTGGACGACG
TCGACCTGGAGGCCGGGCTGGCCGAGGTCATCAAGGGCAGCCCCGAGAAGGCGGAGAGGT
GCTGCCGCATTTGCCACCTTGGCCTCGAGACCGCGGCGGCGGAGTCCGGCGCCGGCATCA
CGCTCGGCTGCTCCTGCAAGGGCGACCTCTCCTACTCCCACAAGCAGTGCGCCGAGACAT
GGTTCAAGATTAGAGGCAACAAGATATGTGAAATCTGTAGCTCTACCGCATGCAATGTGG
TAGGCATTGGTGATTCAGAATCCGTTGAGCAATGGAATGAATCGAACAGCACAGCACCTG
CACAAGCACCACCAGCTGAAACTCAGAGATTTTGGCAAGGGCATCGGTTCCTGAACTTTC
TTCTTGCTTGCATGGTTTTCGCCTTTGTTATCTCATGGCTCTTTCATTTCAACGTCCCGG
GCTAAGTTTTGAAACACATGGTCCTCAATAAAAGCTCCAATGCCATTACTACACACCTGT
GGGTTGGATTTAGTAAATCTGAAGAACAGGCTGAGGTGAAGGAAAGTTATGAAGTGGTAC
AAAAATGTTGGGTGGGGCATGTTGATCTTAACTGTGTCAATGGCAATTGCCTCCTTTCAC
AACGACCAAGATTCCATTAGACAAGAAGCTGGAAGGACAATTTCCTCCTGTTTCCCTTGT
CTGGATGGAGATGAAAACAAAGAATGGAGAATGTGTTTGTTCCGTCAATAGTGCTGTCAT
GGTTTTCAGGAAGAGATTGTGCTGTATCCATTCCCTATCTTCTCAGGCAATTTATCATTT
ATTCTGCTGATTTGGTGTAAGTGTTATCTTCCAGGAGAAAAATGTGCTGAGTTCGGAAGC
ATGTCGCCAGAAAGAATAAACAATATTGTGAAGTTCCTGGGCATATCGCCGCACATGAAA
TTGTCGATTTTGTGG