Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0447200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:21926917:21932028:-1 gene:Os05g0447200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-3, related to AUX1-3, auxin transporter 2 description:Similar to auxin transporter-like protein 1. (Os05t0447200-01);Similar to AUX1-like protein. (Os05t0447200-02)
Sequence	ATGGTGCCGGCCGGCGACCAGGCGGAGGAGGCCATCGTGGCGGACGCCGGGAAGGAGGAG GCGGAGGTGCGCGCGGCCATGGGCGTCGAGCAGGACGGCAAGTTCAGCATGACGAGCCTC CTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGGTACGA CCAACCACGAACGACCTCGTCATGCCTCTCGCTCACATTTCGTTTGGAATTTTGCAGGTG GCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCCTG CTGCTGCAGGTGTTCTACGGCCTCATGGGCAGCTGGACCGCCTACCTCATCAGCGTCCTC TACGTCGAGTACCGCGCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCACGTCATC CAGTGGTTCGAAGTTCTTGATGGGCTCTTGGGCCCGTACTGGAAGGCGGCCGGCCTCGCC TTCAACTGCACCTTCCTGCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGTGCAAGTAAC ATATACTACATCAACGACCGGCTGGACAAGAGGACATGGACGTACATATTCGGGGCGTGC TGCTCCACCACGGTGTTCATCCCCTCCTTCCACAACTACCGCATCTGGTCCTTCCTTGGC CTCGGCATGACCACCTACACCGCCTGGTACCTCGCCATCGCCGCCGCCGTCCACGGCCAG GTCGACGGCGTGACGCACTCGGGCCCGAGCAAGATGGTGCTCTACTTCACTGGCGCCACC AACATCCTCTACACTTTCGGCGGACACGCCGTCACTGTAGAGATCATGCACGCGATGTGG AAGCCGCAGAAGTTCAAGTACATCTACCTGGTGGCGACGCTGTACGTGTTCACGCTGACG CTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGCGACGCGCTGCTGACGCACTCGAAC GCCTTCTCGCTGCTGCCGCGGTCCGGGTGGCGCGACGCGGCGGTGATCCTGATGCTGATC CACCAGTTCATCACGTTCGGGTTCGCGTGCACCCCGCTCTACTTCGTGTGGGAGAAGGCG ATCGGCATGCACGGCACCCGCAGCGTCCTCACCCGCGCGCTCGCCCGCCTCCCCATCGTC GTGCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTC GGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCCTCCCTCTCCCACATCCTCACG TACCGCTCCGCCTCCGCCAGATTGAATGCGGCGGAGAAGCCGCCGCCGTTCCTGCCGAGC TGGAGCGGGATGTTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGGTTC GGCCTCGGCGGCTGGGCCAGCGTCACCAACTTCATCAAGCAGATCGACACGTTCGGGCTC TTCGCCAAGTGCTACCAGTGCCCACCCAGGGCGCACGCCGGGGCGCCCCTGCCGGCTCCG CCGCGCCACTAG

Peptide Sequence

PEP ID	Os05t0447200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:21926917:21932028:-1 gene:Os05g0447200 transcript:Os05t0447200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-3, related to AUX1-3, auxin transporter 2 description:Similar to auxin transporter-like protein 1. (Os05t0447200-01);Similar to AUX1-like protein. (Os05t0447200-02)
Sequence	MVPAGDQAEEAIVADAGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWFSCASNQVR PTTNDLVMPLAHISFGILQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVL YVEYRARKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASN IYYINDRLDKRTWTYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQ VDGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLT LPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKA IGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLSHILT YRSASARLNAAEKPPPFLPSWSGMFVVNVFVVAWVLVVGFGLGGWASVTNFIKQIDTFGL FAKCYQCPPRAHAGAPLPAPPRH

Transcript Sequence

Transcript ID	Os05t0447200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:21926917:21932028:-1 gene:Os05g0447200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-3, related to AUX1-3, auxin transporter 2 description:Similar to auxin transporter-like protein 1. (Os05t0447200-01);Similar to AUX1-like protein. (Os05t0447200-02)
Sequence	TTCTCCCCTCCCACCGTCCCAACTCCCACGTCCGGCTCGGCTCGGGCCTCTCCGTGCCAG AGAGTTTCACTCCTCGCGGAGAAGGAAAAACCGGAGGCGCGCGCGCAGTCGTGGCCGGGG TTGGGAAGATCCGAGAGGCAAGGGGCAAGGGCGGCGTGCGGGTCTGCAGGATCAGGATCC CGAAAAGCTAGCCCGCGGCGAAGTAATAATAACTGCTCCTCTGAATCTCTCCGATCCTCT CGAACCACGAGAAGCTCAGCAGTTTCGGCTCCGCGCGCCGCCTGCCTCTCGGTCGACAGC ACAGTAAATTCCGCCGGCGCGTGGTGCAGCTTTGCCGGCAGCGTGCCGCTCCCACGGCCA TTTACTTCGCCTCCTCTCCTGAGGCAGGCGCGCGGCTGGAGACGGGAAGACCGGGGAGGA CAGGAGGATGGTGCCGGCCGGCGACCAGGCGGAGGAGGCCATCGTGGCGGACGCCGGGAA GGAGGAGGCGGAGGTGCGCGCGGCCATGGGCGTCGAGCAGGACGGCAAGTTCAGCATGAC GAGCCTCCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCA GGTACGACCAACCACGAACGACCTCGTCATGCCTCTCGCTCACATTTCGTTTGGAATTTT GCAGGTGGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTC GGGCCTGCTGCTGCAGGTGTTCTACGGCCTCATGGGCAGCTGGACCGCCTACCTCATCAG CGTCCTCTACGTCGAGTACCGCGCCCGCAAGGAGAAGGAAGGCGTCAGCTTCAAGAACCA CGTCATCCAGTGGTTCGAAGTTCTTGATGGGCTCTTGGGCCCGTACTGGAAGGCGGCCGG CCTCGCCTTCAACTGCACCTTCCTGCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGTGC AAGTAACATATACTACATCAACGACCGGCTGGACAAGAGGACATGGACGTACATATTCGG GGCGTGCTGCTCCACCACGGTGTTCATCCCCTCCTTCCACAACTACCGCATCTGGTCCTT CCTTGGCCTCGGCATGACCACCTACACCGCCTGGTACCTCGCCATCGCCGCCGCCGTCCA CGGCCAGGTCGACGGCGTGACGCACTCGGGCCCGAGCAAGATGGTGCTCTACTTCACTGG CGCCACCAACATCCTCTACACTTTCGGCGGACACGCCGTCACTGTAGAGATCATGCACGC GATGTGGAAGCCGCAGAAGTTCAAGTACATCTACCTGGTGGCGACGCTGTACGTGTTCAC GCTGACGCTGCCGTCGGCGTCGGCCATGTACTGGGCGTTCGGCGACGCGCTGCTGACGCA CTCGAACGCCTTCTCGCTGCTGCCGCGGTCCGGGTGGCGCGACGCGGCGGTGATCCTGAT GCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACCCCGCTCTACTTCGTGTGGGA GAAGGCGATCGGCATGCACGGCACCCGCAGCGTCCTCACCCGCGCGCTCGCCCGCCTCCC CATCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTC CGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCCTCCCTCTCCCACAT CCTCACGTACCGCTCCGCCTCCGCCAGATTGAATGCGGCGGAGAAGCCGCCGCCGTTCCT GCCGAGCTGGAGCGGGATGTTCGTGGTGAACGTGTTCGTGGTGGCGTGGGTGCTGGTGGT CGGGTTCGGCCTCGGCGGCTGGGCCAGCGTCACCAACTTCATCAAGCAGATCGACACGTT CGGGCTCTTCGCCAAGTGCTACCAGTGCCCACCCAGGGCGCACGCCGGGGCGCCCCTGCC GGCTCCGCCGCGCCACTAGCCAAAAAAACCGAGTGCCACGCCGCGACGGCGCGACGCCGC GCGCGGGCCGGTGACAAAAGGAGCTAGCTTCCCCGCGGGCGTCTTGCCTTTGTGTAGTAG GACAGCAGGTCAGCAGCATACATGGTAGGACAGCGCGTGGGTCACTGACTAGATTTACCG CCCTGCAGGGGCTTCCCTATGCTGCGGAGTCTTCAGTTCATGTGTGTTGTTGGCAACTTT GCGTCGTCCTCTTTTGTTTGGGAGTTGGATGTGAACTTGGTCGTAATTTGTAGGTTCTTC TGTTCATGTTACATGCCAATATAAAACGCCATATTTGTTC