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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0444500-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:21758366:21760742:1 gene:Os05g0444500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to solute carrier family 35, member F1. (Os05t0444500-00)
Sequence

ATGAAGAACAAGAGCGCGCCGTGGAGCATGATGTTCCTAGTGTTCCTCGGGCAGCTAGTC
TCCTTCTCCATGGCAGTATGCAGCTTTATCACGTCTCAGATTTCTAGCCTCGGAGCTGAT
GCACCATTTACGCAATCATTCCTTTCGTACCTTCTGTTGGCCCTGGTTTATGGACCAGTT
CTCCTGCATCGACAACGCAAGTTTCTAATGCCATGGTATTGGTACCTCGCCCTGGCCTTC
ATTGATGTCCAGGGAAATTGTCTAGCGATCAAGGCATATCACTACTCATATATCACCAGC
GTAAACTTGTTGAACTGTTGGACCATCACATGGGTCATGATCCTCACCAGGTTTGCACTA
GGCACAAGATATTCTTTGTGGCAATTTGTAGGAGCAGGGACTTGCATGACTGGACTTGCC
CTGGTACTCCTCTCGGATTCAAATTATTCAGATGTGCAGGATGAAAGTAAAAGACCACTT
CTGGGGGATGCCCTTATCATTGTGGCGACATTTTGTTTTGCATTTAGCAATGTTGGGGAG
GAATACTGTGTCAAGAACAAAGACAGGATTGAATTCGTTGCGATGCTTGGAATATTTGGG
ATGCTTGTCACTGGAATTCAGCTATCTCTTTTTGAGAGGAAGAATATAGAGACAATTAAT
TGGTGGTCACCAACAATGATAGGTCTCTTCATTGGATTTGCAGTAGCATCTTTAGTGTTC
AGCTCCATTGCTCCTTTCGTTCTTAAGATGAGTGGAGCAACTATGTTTAACCTCTCACTT
TTAACAACTGATGTTTGGGCGGTCGCCATTTGA

Peptide Sequence

PEP ID

Os05t0444500-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:21758366:21760742:1 gene:Os05g0444500 transcript:Os05t0444500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to solute carrier family 35, member F1. (Os05t0444500-00)
Sequence

MKNKSAPWSMMFLVFLGQLVSFSMAVCSFITSQISSLGADAPFTQSFLSYLLLALVYGPV
LLHRQRKFLMPWYWYLALAFIDVQGNCLAIKAYHYSYITSVNLLNCWTITWVMILTRFAL
GTRYSLWQFVGAGTCMTGLALVLLSDSNYSDVQDESKRPLLGDALIIVATFCFAFSNVGE
EYCVKNKDRIEFVAMLGIFGMLVTGIQLSLFERKNIETINWWSPTMIGLFIGFAVASLVF
SSIAPFVLKMSGATMFNLSLLTTDVWAVAI

Transcript Sequence

Transcript ID

Os05t0444500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:21758366:21760742:1 gene:Os05g0444500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to solute carrier family 35, member F1. (Os05t0444500-00)
Sequence

TTTCTGAACCAACTATAACCTTGGATTTCCTTGAACCGTACTCAGACTCATGAAGAACAA
GAGCGCGCCGTGGAGCATGATGTTCCTAGTGTTCCTCGGGCAGCTAGTCTCCTTCTCCAT
GGCAGTATGCAGCTTTATCACGTCTCAGATTTCTAGCCTCGGAGCTGATGCACCATTTAC
GCAATCATTCCTTTCGTACCTTCTGTTGGCCCTGGTTTATGGACCAGTTCTCCTGCATCG
ACAACGCAAGTTTCTAATGCCATGGTATTGGTACCTCGCCCTGGCCTTCATTGATGTCCA
GGGAAATTGTCTAGCGATCAAGGCATATCACTACTCATATATCACCAGCGTAAACTTGTT
GAACTGTTGGACCATCACATGGGTCATGATCCTCACCAGGTTTGCACTAGGCACAAGATA
TTCTTTGTGGCAATTTGTAGGAGCAGGGACTTGCATGACTGGACTTGCCCTGGTACTCCT
CTCGGATTCAAATTATTCAGATGTGCAGGATGAAAGTAAAAGACCACTTCTGGGGGATGC
CCTTATCATTGTGGCGACATTTTGTTTTGCATTTAGCAATGTTGGGGAGGAATACTGTGT
CAAGAACAAAGACAGGATTGAATTCGTTGCGATGCTTGGAATATTTGGGATGCTTGTCAC
TGGAATTCAGCTATCTCTTTTTGAGAGGAAGAATATAGAGACAATTAATTGGTGGTCACC
AACAATGATAGGTCTCTTCATTGGATTTGCAGTAGCATCTTTAGTGTTCAGCTCCATTGC
TCCTTTCGTTCTTAAGATGAGTGGAGCAACTATGTTTAACCTCTCACTTTTAACAACTGA
TGTTTGGGCGGTCGCCATTTGAGTTTTCCTCTATCATCAGCAGGTTAATTGGCTCTACTA
TCTAGCTTTTGCAGTGGTAGCCATTGGATTGATCATCTACTCCATAAACGAGAGTTCAGA
TGATGAGACAGCTGCAAGTACAATGGAAACTGAAACTCAGTATGACTATGAACAACTTTT
ATGTGAATAAACTGGTGGTGCTGTTTAGGACTGGCAAACAATCAGGAAGATCACAACTGT
TAATGGGTTAATAAAGAAAAGTAAGCTCCAGGCAATGGAAAATGTTATTTTGGAAAATTC
AGATGTGATGACAGAGCATGTATATTAAATACTGTAACCATGGATCGGTGAAAT