Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0443300-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:21692530:21697823:-1 gene:Os05g0443300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os05t0443300-01)
Sequence	ATGGCGGCGCGCGCTACGTTCTCCCGCTTCCCCGTGACGGCGGAGGCGCTGGAGGCGTGC GCCGTGCAGTGGGGCATCGCCGTGACGCCCTTCGCCGCCGCCGACGAGCGCGGCCAGGCG CCGGCCGCGGGCGCCGGCGGCGACCGGGTCCCGCGCTGCGAGCACTGCTGGGCCTACCTG AACAGCCACTGCGACATGGAGCGCTGGGGCTGGTCCTGCGCCCTCTGCGGCACCCTCAAC GGCTTCGACGACGACGCGCTCCGCCGCCTCCAACACCCCGAAGGGTGGCCTGAGCTCACC TCCTCCTTCGTTGACCTCGAGATCCCAGTGGATGGCTCGGAGGGTGCAGGAGACGGTGTG CAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCATGTTCTGAAGAGTTCCTGGAG CTTATTAAGAGTGCACTTCTGGCAGCTCTAGAAGCTCTGATTCCAGGCTCCCTGTTTGGG CTTATGACGTTCAGTCACAAGATTGGACTGTATGATGTACAAGGTCCAATTCCAGTTGTA AAAAATGTTTTCATCCCTCCAGACACAGAAGAAGATGGGCTGCCTGTTGCCCTTGAAGAT GCCATGCCCCTACTTTCTTTTTTGGCCCCTATCGACACATGCAAAGATCGAATTGCTGCT GCCCTTGATACATTGCGACCTACATCTTCATGGGAGCGAGGTGCTGCTTCTGGGCAGGAA CCTGATACTGTTTTGCTTGGTGGCCGAGGTTTTGGAACAGCCATGTCTGCTCTAACTGAC TACCTAAGTTCAGAGTATGGAACTACTTTTGCTTTGGCTAGGGTATTTGCTTTTCTGTCT GGTGCTCCTGATTATGGAGATGGTCAACTAGACACTAGGAGATATGGTGAACAATATGCT AGCAAAGGGGAAGACCCTGACCTTGCATTACTTCCTGAACAGATACCATTTTATAAAGAC CTGGCAGCTGTCGCTGTTCAAGCAGGAGTATGTGTAGACATATTTGCTATAACCGACGAA TACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTGGTGGCTCATTGTTTCTG TATACAAATACAGACGATTCAACACTTCCCCAGGACATATATCGCTTATTGAGTAGACCC TATGCATTTGGTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCT TATGGCCATTTCTTCCCTGATCCTCAATATGAACATGTGCAACATATCATCTGCTGCGAT TCATTTGCTACTTATGCATATGACTTTAACTTTTCACACCCTGAGGGCTTTTCCAGGCAC ACAGATCCTGCTGTTGTACAAATTGCATTTCAGTATAGTGTTATTGAACCTGTCAAGCAT ACATCAGAGAATGAAACACAATCATCTACAAGTAACATGTTTTGTCTAAAGAGGCGGTTG AGAATAAGGACATTGCAGTATCGACCAGCTAAAAATATCAACGAAATATATGACAGTGTT GATCCAGAGACTCTCCTACATATTCTAGTACATAAGGTTATTTTAATTTCATTGGATAAA GGAGTTAAAGAGGGCAGAAGTTTGGTACATGATTGGCTGTCTCTCCTTATAGCTCGGTAT AATCAGGCATTGAGATCTGATGCACGAATTCCAGAATCACATGTTGATGTTGACTTCTTA CAGTGCCCACAGCTGCAAATGTTACCTCAGCTTGTGTTTGCATTGTTAAGGAACCCTCTT CTTCAGTTGCATGAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTC AGTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCATACTCG TCACCCGACAAGCAAGCATTCCCTCGGCATACGTTGAGCCGGGCTGCTCTAATCATGAGT GAGAGCCCCATATTTCTTCTGGATGCATTTACGAACCTTATTGTTTACTATTCACCGTCT GCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTGTCTTTTGAGAACCATGGTTAAT GAGTTGAAGCAGGGCAGGTGTATAACACCAAAGCTGACATTTATCCATGGAGGACGAGAA GATCCAGCATTGTTTGAGAGGTATCTTATTGAAGAGCAAGATGTTGACGGTACAGGGTTT ACAAGTGGTAAAGGGTTTGTATCGTTCCGTGAGAGCATCAGGCATGCTGCAACAGACATC ATCGAGACAGAAAGTAGTATCTAG

Peptide Sequence

PEP ID	Os05t0443300-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:21692530:21697823:-1 gene:Os05g0443300 transcript:Os05t0443300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os05t0443300-01)
Sequence	MAARATFSRFPVTAEALEACAVQWGIAVTPFAAADERGQAPAAGAGGDRVPRCEHCWAYL NSHCDMERWGWSCALCGTLNGFDDDALRRLQHPEGWPELTSSFVDLEIPVDGSEGAGDGV QARPVYVAAVDLACSEEFLELIKSALLAALEALIPGSLFGLMTFSHKIGLYDVQGPIPVV KNVFIPPDTEEDGLPVALEDAMPLLSFLAPIDTCKDRIAAALDTLRPTSSWERGAASGQE PDTVLLGGRGFGTAMSALTDYLSSEYGTTFALARVFAFLSGAPDYGDGQLDTRRYGEQYA SKGEDPDLALLPEQIPFYKDLAAVAVQAGVCVDIFAITDEYTDLASLKFLSIESGGSLFL YTNTDDSTLPQDIYRLLSRPYAFGCVLRLRTSSDFEPGNSYGHFFPDPQYEHVQHIICCD SFATYAYDFNFSHPEGFSRHTDPAVVQIAFQYSVIEPVKHTSENETQSSTSNMFCLKRRL RIRTLQYRPAKNINEIYDSVDPETLLHILVHKVILISLDKGVKEGRSLVHDWLSLLIARY NQALRSDARIPESHVDVDFLQCPQLQMLPQLVFALLRNPLLQLHEEGIHPDYRIYLQCLF SALEPSSLAKAIYPVLVSYSSPDKQAFPRHTLSRAALIMSESPIFLLDAFTNLIVYYSPS ADPSLPFPPPHDCLLRTMVNELKQGRCITPKLTFIHGGREDPALFERYLIEEQDVDGTGF TSGKGFVSFRESIRHAATDIIETESSI

Transcript Sequence

Transcript ID	Os05t0443300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:21692530:21697823:-1 gene:Os05g0443300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os05t0443300-01)
Sequence	GCGGTCGCGGCTCGCGCGGCGCCCATCTCGTGTACTCCCCACCCTACCCCCACCTCGCCG TCGCCCTCGCCCTCGCCGGAATCCCTCGGCCTCGCGATGGCGGCGCGCGCTACGTTCTCC CGCTTCCCCGTGACGGCGGAGGCGCTGGAGGCGTGCGCCGTGCAGTGGGGCATCGCCGTG ACGCCCTTCGCCGCCGCCGACGAGCGCGGCCAGGCGCCGGCCGCGGGCGCCGGCGGCGAC CGGGTCCCGCGCTGCGAGCACTGCTGGGCCTACCTGAACAGCCACTGCGACATGGAGCGC TGGGGCTGGTCCTGCGCCCTCTGCGGCACCCTCAACGGCTTCGACGACGACGCGCTCCGC CGCCTCCAACACCCCGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATC CCAGTGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCG GCTGTCGATCTTGCATGTTCTGAAGAGTTCCTGGAGCTTATTAAGAGTGCACTTCTGGCA GCTCTAGAAGCTCTGATTCCAGGCTCCCTGTTTGGGCTTATGACGTTCAGTCACAAGATT GGACTGTATGATGTACAAGGTCCAATTCCAGTTGTAAAAAATGTTTTCATCCCTCCAGAC ACAGAAGAAGATGGGCTGCCTGTTGCCCTTGAAGATGCCATGCCCCTACTTTCTTTTTTG GCCCCTATCGACACATGCAAAGATCGAATTGCTGCTGCCCTTGATACATTGCGACCTACA TCTTCATGGGAGCGAGGTGCTGCTTCTGGGCAGGAACCTGATACTGTTTTGCTTGGTGGC CGAGGTTTTGGAACAGCCATGTCTGCTCTAACTGACTACCTAAGTTCAGAGTATGGAACT ACTTTTGCTTTGGCTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGT CAACTAGACACTAGGAGATATGGTGAACAATATGCTAGCAAAGGGGAAGACCCTGACCTT GCATTACTTCCTGAACAGATACCATTTTATAAAGACCTGGCAGCTGTCGCTGTTCAAGCA GGAGTATGTGTAGACATATTTGCTATAACCGACGAATACACCGATTTGGCTTCGTTGAAG TTTTTAAGTATTGAAAGTGGTGGCTCATTGTTTCTGTATACAAATACAGACGATTCAACA CTTCCCCAGGACATATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGG TTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTTATGGCCATTTCTTCCCTGATCCT CAATATGAACATGTGCAACATATCATCTGCTGCGATTCATTTGCTACTTATGCATATGAC TTTAACTTTTCACACCCTGAGGGCTTTTCCAGGCACACAGATCCTGCTGTTGTACAAATT GCATTTCAGTATAGTGTTATTGAACCTGTCAAGCATACATCAGAGAATGAAACACAATCA TCTACAAGTAACATGTTTTGTCTAAAGAGGCGGTTGAGAATAAGGACATTGCAGTATCGA CCAGCTAAAAATATCAACGAAATATATGACAGTGTTGATCCAGAGACTCTCCTACATATT CTAGTACATAAGGTTATTTTAATTTCATTGGATAAAGGAGTTAAAGAGGGCAGAAGTTTG GTACATGATTGGCTGTCTCTCCTTATAGCTCGGTATAATCAGGCATTGAGATCTGATGCA CGAATTCCAGAATCACATGTTGATGTTGACTTCTTACAGTGCCCACAGCTGCAAATGTTA CCTCAGCTTGTGTTTGCATTGTTAAGGAACCCTCTTCTTCAGTTGCATGAAGAAGGCATT CACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGTGCCCTGGAGCCATCTTCTCTA GCCAAAGCTATATACCCAGTTTTAGTTTCATACTCGTCACCCGACAAGCAAGCATTCCCT CGGCATACGTTGAGCCGGGCTGCTCTAATCATGAGTGAGAGCCCCATATTTCTTCTGGAT GCATTTACGAACCTTATTGTTTACTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCT CCACCTCATGACTGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATA ACACCAAAGCTGACATTTATCCATGGAGGACGAGAAGATCCAGCATTGTTTGAGAGGTAT CTTATTGAAGAGCAAGATGTTGACGGTACAGGGTTTACAAGTGGTAAAGGGTTTGTATCG TTCCGTGAGAGCATCAGGCATGCTGCAACAGACATCATCGAGACAGAAAGTAGTATCTAG TTCAAGACGTAGCACAATTCAGCTCCAAAATCATGGAGTAGATTGTATGAAGTCATCATA GCCTTCATTCCTTCATATAGATATAGCCTTGGAGCAATAAAAGGGGAGGGGATCTTCTGG CATCATAGTTGCCTGTGTGTCTGTGTCACTGTCAGTAGCTTAACTTTGTGGCATTTCGTG TATATCCGGTACCTCTTTTATTTTGTATACTCTTTTTGTTACGGAACACAGCGATACAAA GAATAACACATCAGATTTATACAG