Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0439300-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:21518063:21519882:-1 gene:Os05g0439300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0439300-01)
Sequence	ATGCCGCCGCCGCCGTCTTCCAGCGCGCCTTGGCAGCTGGAGGACGCGGTCATGGCGAGG CTCCGCGCCTGCGTGACGTTCCGGGACCTCCTCCGCGTCCACGGGCACGTCGTGCGGCTC CGCATCTCGCAAAGCAGCTACCTCGCCACCCAGATCGTCCATCTCTGCAACGCCCACCGC CGCGTCACCCACGCCGCGCGGGTGTTCGCCCAGGTGCGCGACCCAAACCTCCACCTCCAC AACGCCATGATCAAGGCGTACGCCCAGAACCACCAGCACCGCGACGCCGTCGCGGTCTAC ATCCGCATGCTCAGGTGCCCCACGTCCCCTCCGGATGGTCACGCCGGCGGCGACCGGTTC ACGTACCCGTTCCTGCTCAAGGCCTGTGGCGGAACGGCGGCGCTTGAGCTGGGAAAGCAG GTGCACACGCACGTGGTGAGATCCGGGTGCGACTCCAGTGCCATCGTTCAGAACTCCCTG ATCGAGATGTACACGCGAGCCGGCGACCTGGCGCTCGCGCACAAGGTGTTCGATGAAATG CGGGAAAGGGACGTGGTTTCCTGGAACATGCTTATATCGGCACACGCGCGGCTGGGCCAG ATGAGGAAAGCAACAGCATTGTTCAACTCCATGCCTGACAAGACAATTGTTACATGGACG GCGATGGTTTCTGGGTACACGACGGTCGGGGACTACCCGGGCGCCGTCGACGCGTTCAGG TCGATGCAAACGGAAGGCTTCGAGCCGGACGACGTGAGCATCGTCGCGGTGTTGCCGGCA TGTGCCCAGCTGGGAGCTCTGGAGCTAGGCAGATGGATATACGCCTACTGCAAAAGGCAC GGCATGCTGACAAGTACACACATCTGCAATGCGCTAATGGAGATGTACGCCAAGTGCGGG TGCATCGACCAAGCGCTGCAGCTGTTCGACGGCATGGCCGACAAGGACGTCATCTCGTGG AGCACGGTGATCGGCGGCCTCGCGGCGCACGGGAGAGCGCACGAGGCCGTCTGGCTGTTC ACCGAGATGGAGAAGGAAGGAAAGGTGAGGCCTAATGTCATCACCTTCGTCGGGCTCTTG TCAGCCTGCTCCTACGCCGGGCTCGTCGACGAAGGGCTGAGCCACTTCGACCGGATGAAC GACGTCTACGGCGTCGAGCCCGGCGTCGAGCACTACGGCTGCGTCGTCGACCTCCTCGGC CGGTCGGGACAAATCCGGCGCGCGCTGGACTTGGTGCGCGACATGCCGGTGCCCGCCGAC GCGAAGGTCTGGGGCTCGTTGCTCAGCGCGTGCCGGAGCCACGGCGACGTCGACACGGCC GTGCTGGCCGCCGAGAGGCTGGTCGAGCTGGAGCCGGACGACGTGGGCAACCTCGTCATG CTGGCCAACGTGTACGCCGCGGCGAGGCGGTGGAGCGACGTGGCGAGCACGAGGAAGGCG ATACGGAGCAGGAGCATGAGGAAGACGCCGGGGTGCAGCCTGATCGAGGTGGGCAACGTG GTGAGGGAGTTCGTCGCCGGAGAGGGTCTGAGCTCTGAACTTGGAGGCCTTGCTGGCGTT TTGGACATCTTGGCCTCTCACCTTGCAGACGACGAGGAGGATATAGATTTCGCTGATTCG GATTGTACGGTTTATGCAAATCTGGCAAACGATTGA

Peptide Sequence

PEP ID	Os05t0439300-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:21518063:21519882:-1 gene:Os05g0439300 transcript:Os05t0439300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0439300-01)
Sequence	MPPPPSSSAPWQLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHR RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR SMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG CIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLL SACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPAD AKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKA IRSRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLADDEEDIDFADS DCTVYANLAND

Transcript Sequence

Transcript ID	Os05t0439300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:21518063:21519882:-1 gene:Os05g0439300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0439300-01)
Sequence	TTTGATGTTAAGACGGTCAAGTCTCTGACCTCCCGCGGAAGCACACCAACCGCTTGCCGA ACGTACCACACAGCCAATTCATCGAACACCTTGTCTGCTAACACCATGCCGCCGCCGCCG TCTTCCAGCGCGCCTTGGCAGCTGGAGGACGCGGTCATGGCGAGGCTCCGCGCCTGCGTG ACGTTCCGGGACCTCCTCCGCGTCCACGGGCACGTCGTGCGGCTCCGCATCTCGCAAAGC AGCTACCTCGCCACCCAGATCGTCCATCTCTGCAACGCCCACCGCCGCGTCACCCACGCC GCGCGGGTGTTCGCCCAGGTGCGCGACCCAAACCTCCACCTCCACAACGCCATGATCAAG GCGTACGCCCAGAACCACCAGCACCGCGACGCCGTCGCGGTCTACATCCGCATGCTCAGG TGCCCCACGTCCCCTCCGGATGGTCACGCCGGCGGCGACCGGTTCACGTACCCGTTCCTG CTCAAGGCCTGTGGCGGAACGGCGGCGCTTGAGCTGGGAAAGCAGGTGCACACGCACGTG GTGAGATCCGGGTGCGACTCCAGTGCCATCGTTCAGAACTCCCTGATCGAGATGTACACG CGAGCCGGCGACCTGGCGCTCGCGCACAAGGTGTTCGATGAAATGCGGGAAAGGGACGTG GTTTCCTGGAACATGCTTATATCGGCACACGCGCGGCTGGGCCAGATGAGGAAAGCAACA GCATTGTTCAACTCCATGCCTGACAAGACAATTGTTACATGGACGGCGATGGTTTCTGGG TACACGACGGTCGGGGACTACCCGGGCGCCGTCGACGCGTTCAGGTCGATGCAAACGGAA GGCTTCGAGCCGGACGACGTGAGCATCGTCGCGGTGTTGCCGGCATGTGCCCAGCTGGGA GCTCTGGAGCTAGGCAGATGGATATACGCCTACTGCAAAAGGCACGGCATGCTGACAAGT ACACACATCTGCAATGCGCTAATGGAGATGTACGCCAAGTGCGGGTGCATCGACCAAGCG CTGCAGCTGTTCGACGGCATGGCCGACAAGGACGTCATCTCGTGGAGCACGGTGATCGGC GGCCTCGCGGCGCACGGGAGAGCGCACGAGGCCGTCTGGCTGTTCACCGAGATGGAGAAG GAAGGAAAGGTGAGGCCTAATGTCATCACCTTCGTCGGGCTCTTGTCAGCCTGCTCCTAC GCCGGGCTCGTCGACGAAGGGCTGAGCCACTTCGACCGGATGAACGACGTCTACGGCGTC GAGCCCGGCGTCGAGCACTACGGCTGCGTCGTCGACCTCCTCGGCCGGTCGGGACAAATC CGGCGCGCGCTGGACTTGGTGCGCGACATGCCGGTGCCCGCCGACGCGAAGGTCTGGGGC TCGTTGCTCAGCGCGTGCCGGAGCCACGGCGACGTCGACACGGCCGTGCTGGCCGCCGAG AGGCTGGTCGAGCTGGAGCCGGACGACGTGGGCAACCTCGTCATGCTGGCCAACGTGTAC GCCGCGGCGAGGCGGTGGAGCGACGTGGCGAGCACGAGGAAGGCGATACGGAGCAGGAGC ATGAGGAAGACGCCGGGGTGCAGCCTGATCGAGGTGGGCAACGTGGTGAGGGAGTTCGTC GCCGGAGAGGGTCTGAGCTCTGAACTTGGAGGCCTTGCTGGCGTTTTGGACATCTTGGCC TCTCACCTTGCAGACGACGAGGAGGATATAGATTTCGCTGATTCGGATTGTACGGTTTAT GCAAATCTGGCAAACGATTGATGACAAATTGGCAATCACATATATGAAATGAGAGGGGGA AAAATAAGCAGGTTATTTTC