Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0432400-03
CDS Infomation

cds chromosome:IRGSP-1.0:5:21202035:21204725:1 gene:Os05g0432400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0432400-01);Protein of unknown function DUF1682 family protein. (Os05t0432400-02);Protein of unknown function DUF1682 family protein. (Os05t0432400-03)
Sequence

ATGGCGACGGCGAGCTCGATCCGGCCGCCACGCGCGGCGCTAGTCCTCCTCCTGCTCGCG
CTGTCCTTCTCCCTCACCCTCGCCGCCCACTTCGAGGGCTTTGGCTCCGACGACCTCCAC
TCCGCCCACGCCGACGCGGCCTCGGCAGACGACGAAGACGACGAGGGGCTCGACGTCGAG
CTCCCGCCGCCGCCGCGCATCTCCCTCTCCACTTCAACTCCTTCCCCTCCCGTCACCACC
ACCACCACCACCACCTCCGCTCCAAACCCTAACCCCGATCCCAACCCGACGCTGACCCCG
CCGAACCCCACCCCGACGCTCGATCTCTGGGACGAGGACGAGTTCGAGGGCATCCCTGTC
CCGGAAGCGGCCTCCTCCGACGAATCCTCCACGCCGGCGGAAGCCGCCCCGTCAGATCCC
GCGGCCGATGCCGCGGCCGAGGCGGCGCCAGCCCCGCCCCGGCGGCCCGCGGAGCTGCTC
CGCGCGTACACCGTCGAGATCGCGTGCGTCAGCTTCCTGATCTGCTTCCTGCTCAACTAC
TTCACCGGGAAGCGGCAGAACGAGGCGATCGCGCTCGCCTGGGCCACCAGGTTCGCCACC
AGGGACTCCATCTTCGACAAGAACTTCAGCCTCCTCGGCACCGGCGACGGCAAGGACACG
CCGCTCCTGATGAAGGAAGGGCAGGACGTGTTCAAGTTCTACGCGAGCGGGAGGCGGTAC
TGCCAGGGGATGCTCGCCACCATGGAGATGCGCGCGCGGCACGACCTGCTGTCCAAGCTG
GTGGAGCTGGTGTTCCCCAGGAAGGACACCATCACGTTCGAGGTGGTGATGAACGAGGAA
GCCATGGACCACGTCATGTTGGCCGTGGCGAGGAAGAAGGCGGCCAAGACGATGCAGAAG
GAGGAGAGGGATCTGCAGAAATTTGCCGGGGTTCTGACCTCGGCACCCGCCGGGAGGAGA
TGGGTTGCGGATGAGCTTGCGGTAGTGGCCGAGTCAAAGGAGGTTGCTGGGGATATGATT
ACTGAAGCCGTGCTGGACCAGGTCCTTGGTGACAAAGCTTTTGAGAAATTTGGGAAATGG
TTCATCTCACTTCATTTTTCAGATCAACTGGCAGGCTCTTACAAGAAAGTCCTTTCTTTC
AAGTTTGTACTGCCAGATGCAAGCAACATGGCTGAGATGACAAGATTAGTTGCTCTCGTG
CCATACTACATTGATTTGGTGGGGCGTTACAAGCTCAGCAACCATGCTCGTTCCAAAACT
GAAGCTGCAAGAACAAAAGCTTCCCAGGAGGCTTTCAGGGAGCAACAGGGTCTAAGGCAG
GAAGCCCTTCAAAGGAAGAAGGCTGAGAAGAAAAAACTTATGGAAGAGGCAGAGGCCAAA
TTGAGCGCCGAGGCACTCCGCAAGAAAGAGGAAAAAGAAAGGGCTCGTCAGATGAAGAAG
TCCATGCCCAAAGTTAAAATGCTCCGTTCCTAG

Peptide Sequence

PEP ID

Os05t0432400-03
PEP Infomation

pep chromosome:IRGSP-1.0:5:21202035:21204725:1 gene:Os05g0432400 transcript:Os05t0432400-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0432400-01);Protein of unknown function DUF1682 family protein. (Os05t0432400-02);Protein of unknown function DUF1682 family protein. (Os05t0432400-03)
Sequence

MATASSIRPPRAALVLLLLALSFSLTLAAHFEGFGSDDLHSAHADAASADDEDDEGLDVE
LPPPPRISLSTSTPSPPVTTTTTTTSAPNPNPDPNPTLTPPNPTPTLDLWDEDEFEGIPV
PEAASSDESSTPAEAAPSDPAADAAAEAAPAPPRRPAELLRAYTVEIACVSFLICFLLNY
FTGKRQNEAIALAWATRFATRDSIFDKNFSLLGTGDGKDTPLLMKEGQDVFKFYASGRRY
CQGMLATMEMRARHDLLSKLVELVFPRKDTITFEVVMNEEAMDHVMLAVARKKAAKTMQK
EERDLQKFAGVLTSAPAGRRWVADELAVVAESKEVAGDMITEAVLDQVLGDKAFEKFGKW
FISLHFSDQLAGSYKKVLSFKFVLPDASNMAEMTRLVALVPYYIDLVGRYKLSNHARSKT
EAARTKASQEAFREQQGLRQEALQRKKAEKKKLMEEAEAKLSAEALRKKEEKERARQMKK
SMPKVKMLRS

Transcript Sequence

Transcript ID

Os05t0432400-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:21202035:21204725:1 gene:Os05g0432400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0432400-01);Protein of unknown function DUF1682 family protein. (Os05t0432400-02);Protein of unknown function DUF1682 family protein. (Os05t0432400-03)
Sequence

AAAGAACAGGAGAATTATCCCCACTTCCAGAGTCCAAACCTCCCCGTCCATGGCGACGGC
GAGCTCGATCCGGCCGCCACGCGCGGCGCTAGTCCTCCTCCTGCTCGCGCTGTCCTTCTC
CCTCACCCTCGCCGCCCACTTCGAGGGCTTTGGCTCCGACGACCTCCACTCCGCCCACGC
CGACGCGGCCTCGGCAGACGACGAAGACGACGAGGGGCTCGACGTCGAGCTCCCGCCGCC
GCCGCGCATCTCCCTCTCCACTTCAACTCCTTCCCCTCCCGTCACCACCACCACCACCAC
CACCTCCGCTCCAAACCCTAACCCCGATCCCAACCCGACGCTGACCCCGCCGAACCCCAC
CCCGACGCTCGATCTCTGGGACGAGGACGAGTTCGAGGGCATCCCTGTCCCGGAAGCGGC
CTCCTCCGACGAATCCTCCACGCCGGCGGAAGCCGCCCCGTCAGATCCCGCGGCCGATGC
CGCGGCCGAGGCGGCGCCAGCCCCGCCCCGGCGGCCCGCGGAGCTGCTCCGCGCGTACAC
CGTCGAGATCGCGTGCGTCAGCTTCCTGATCTGCTTCCTGCTCAACTACTTCACCGGGAA
GCGGCAGAACGAGGCGATCGCGCTCGCCTGGGCCACCAGGTTCGCCACCAGGGACTCCAT
CTTCGACAAGAACTTCAGCCTCCTCGGCACCGGCGACGGCAAGGACACGCCGCTCCTGAT
GAAGGAAGGGCAGGACGTGTTCAAGTTCTACGCGAGCGGGAGGCGGTACTGCCAGGGGAT
GCTCGCCACCATGGAGATGCGCGCGCGGCACGACCTGCTGTCCAAGCTGGTGGAGCTGGT
GTTCCCCAGGAAGGACACCATCACGTTCGAGGTGGTGATGAACGAGGAAGCCATGGACCA
CGTCATGTTGGCCGTGGCGAGGAAGAAGGCGGCCAAGACGATGCAGAAGGAGGAGAGGGA
TCTGCAGAAATTTGCCGGGGTTCTGACCTCGGCACCCGCCGGGAGGAGATGGGTTGCGGA
TGAGCTTGCGGTAGTGGCCGAGTCAAAGGAGGTTGCTGGGGATATGATTACTGAAGCCGT
GCTGGACCAGGTCCTTGGTGACAAAGCTTTTGAGAAATTTGGGAAATGGTTCATCTCACT
TCATTTTTCAGATCAACTGGCAGGCTCTTACAAGAAAGTCCTTTCTTTCAAGTTTGTACT
GCCAGATGCAAGCAACATGGCTGAGATGACAAGATTAGTTGCTCTCGTGCCATACTACAT
TGATTTGGTGGGGCGTTACAAGCTCAGCAACCATGCTCGTTCCAAAACTGAAGCTGCAAG
AACAAAAGCTTCCCAGGAGGCTTTCAGGGAGCAACAGGGTCTAAGGCAGGAAGCCCTTCA
AAGGAAGAAGGCTGAGAAGAAAAAACTTATGGAAGAGGCAGAGGCCAAATTGAGCGCCGA
GGCACTCCGCAAGAAAGAGGAAAAAGAAAGGGCTCGTCAGATGAAGAAGTCCATGCCCAA
AGTTAAAATGCTCCGTTCCTAGTAACATCAAAGATATATCACAGCACTGGCTTTAGCTAT
TCAGTTGCTGATTAGCTTATTGTTGCCTGCCAGACTCTTTTATGTTCTTCTGGGCCATCA
ACTTTTCTTTGCCATGGGGGGATACAAGCGAAAGGAAATAGGTGAAGATAATCTTTTGCT
GTTGTTTCAGCTTGTCGCTTGTTGGGGGATTAATTTGAAACGCTGTTTTCCTTGTATTAA
TATACGCAGGCTGGAATGGCGTC