Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0429000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:21050904:21054702:-1 gene:Os05g0429000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 5 description:Similar to Hydroxymethyltransferase. (Os05t0429000-01)
Sequence	ATGCTCGATCGCGCGACGGGGGGGCGGCGCCGCGCCGCGGGCGAAGGGATGGACCATCGG CCCGACCTGTCCCTCGCCCTCCACCCGCCGCCGCCGCCCGAGGGCTCGTCCGCCGCCGCC GCCGAGGAGGTGGGGGAGGAGGAGGCCGAAGGCGGCGAGGGGCGGTTCTCCCTCATGGGC CAGCCGCTCTTCCTCAAGCGGCCGCGGCCGCGGCCCCCGCGCCCGCCCCGCGCGCGCGGG GTGGGGGACGACGTCGACGTCGACGTCGACGACGACTCATCCCCGTGCTGCTCCTCCTCC TGCCTCTCGCCCGCGGCGAAGCGGCGGGCGGCGGCGGGAGGACTCGAGGCGCGCCGCGCG GCCGTGCGCGCGTGGGGATGCCAGCCGCTCACGGAGGCGGACCCGGACGTGCACGAGCTG ATGGAGCGGGAGCGGCGCCGGCAGGCGGGCGGGGTCGAGCTCATCGCCTCCGAGAACTAC GCCTGCCGCGCGGTGCTCGACGCGCTCGGCAGCCACCTCACCAACAAGTACTCCGAGGGC CTCCCCGGCGCGCGCTACTACTGCGGCAACCAGCACATCGACGCCATCGAGCGCCTCTGC TGCGACCGCGCGCTCGCCGCCTTCGGCCTCGACCCGTCGCGCTGGGGCGTCAACGTGCAG CCCTACTCCTGCACCTCCGCCAACTTCGCCGTCTACACGGGGCTCCTCCTCCCCAACGAC AGGATCATGGGCCTCGACTCGCCGTCCGGCGGCCACGTCAGCCACGGGTACTACACGCCC AGCGGCAAGAAGGTCTCCGGCGCCTCCATCTTCTTCGAGAACCTCTCCTACAGGGTGAAC CCGCACACCGGGTACATCGATTACGATAAGGTAGAGGAGAAGGCCGTGGATTTCCACCCC AAGATTCTCATCTGCGGCGCGAGCTCGTATCCAAGGGATTGGGACTATGCACGGATGCGG CTTGTTGCTGATAAGTGCGGCGCAGTACTCATGTGTGACATGGCACAAATCAGTGGTCTT GTGGCAGCGAAGGAATGTCGAAATCCCTTTGACTACTGCGATATTGTTACTTCAACCACA CACAAGAGCTTGAGGGGTCCTAGAGGTGGTATAATATTTTTCAGGAAAGGGAAAAATCTA AGGAAACGGGTCGGATCTTTAACTCAAGTGGTTGAAAATGATCAGTATGATTTTGAGGAC CGTATAAATTTTGCTGTTTTCCCTTCAATGCAAGGTGGACCCCACAATAACCATATTGCT GCTCTGGCTATAGCTCTAAAACAAGTAGCCATGCCAGAATTCAAAGCATACATTCAACAA GTCAAGAAAAATGCCCAAGCTTTGGCGATGGCCTTGCTCAGGAGGAAATGCAGACTGGTT ACTGGTGGCACAGATAATCATTTGATGCTCTGGGACCTAAGAACATTTGGCTTGACAGGG AAGAACTTTGAGAAGGTCTGTGAGGCATGTCATATCTCTCTTAATAAAACACCAATATAT GGAGATAATGGTTCGATTTCTCCTGGAGGTGTGCGGATTGGAACTCCTGCCATGACAACT AGAGGTTGCTTGGAGAGTGACTTTGAGATAATGGCAGAATTCCTTTTGAGGGCAGCACAT ATAGCAAGTATTGTTTTGAAGGAGCATGGAAGGCTTCAGAAGGATTTTCTGAAAGGTCTG GAGAACAATAATGACATTATTGAACTCCGGAATCAGGTGGAGACATTTGCCTTACAATTT GCCATGCCGGGATTTGATGTATAA

Peptide Sequence

PEP ID	Os05t0429000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:21050904:21054702:-1 gene:Os05g0429000 transcript:Os05t0429000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 5 description:Similar to Hydroxymethyltransferase. (Os05t0429000-01)
Sequence	MLDRATGGRRRAAGEGMDHRPDLSLALHPPPPPEGSSAAAAEEVGEEEAEGGEGRFSLMG QPLFLKRPRPRPPRPPRARGVGDDVDVDVDDDSSPCCSSSCLSPAAKRRAAAGGLEARRA AVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEG LPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPND RIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGYIDYDKVEEKAVDFHP KILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTT HKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIA ALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTG KNFEKVCEACHISLNKTPIYGDNGSISPGGVRIGTPAMTTRGCLESDFEIMAEFLLRAAH IASIVLKEHGRLQKDFLKGLENNNDIIELRNQVETFALQFAMPGFDV

Transcript Sequence

Transcript ID	Os05t0429000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:21050904:21054702:-1 gene:Os05g0429000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 5 description:Similar to Hydroxymethyltransferase. (Os05t0429000-01)
Sequence	CACCCCGCCGTAGCCACCCACCAATACGCCGCAATTTGGCCCAGGCCACCCAACTCCAAA ATCGCGCATCGCATCGCGAGTCGCGACGCGAACCGAGCCCACGAAATCACGCGACGTCGT CGTCCGAATCGAATGCCGCGACCCCGCCGCTGTTGCTGCTGATGCTCGATCGCGCGACGG GGGGGCGGCGCCGCGCCGCGGGCGAAGGGATGGACCATCGGCCCGACCTGTCCCTCGCCC TCCACCCGCCGCCGCCGCCCGAGGGCTCGTCCGCCGCCGCCGCCGAGGAGGTGGGGGAGG AGGAGGCCGAAGGCGGCGAGGGGCGGTTCTCCCTCATGGGCCAGCCGCTCTTCCTCAAGC GGCCGCGGCCGCGGCCCCCGCGCCCGCCCCGCGCGCGCGGGGTGGGGGACGACGTCGACG TCGACGTCGACGACGACTCATCCCCGTGCTGCTCCTCCTCCTGCCTCTCGCCCGCGGCGA AGCGGCGGGCGGCGGCGGGAGGACTCGAGGCGCGCCGCGCGGCCGTGCGCGCGTGGGGAT GCCAGCCGCTCACGGAGGCGGACCCGGACGTGCACGAGCTGATGGAGCGGGAGCGGCGCC GGCAGGCGGGCGGGGTCGAGCTCATCGCCTCCGAGAACTACGCCTGCCGCGCGGTGCTCG ACGCGCTCGGCAGCCACCTCACCAACAAGTACTCCGAGGGCCTCCCCGGCGCGCGCTACT ACTGCGGCAACCAGCACATCGACGCCATCGAGCGCCTCTGCTGCGACCGCGCGCTCGCCG CCTTCGGCCTCGACCCGTCGCGCTGGGGCGTCAACGTGCAGCCCTACTCCTGCACCTCCG CCAACTTCGCCGTCTACACGGGGCTCCTCCTCCCCAACGACAGGATCATGGGCCTCGACT CGCCGTCCGGCGGCCACGTCAGCCACGGGTACTACACGCCCAGCGGCAAGAAGGTCTCCG GCGCCTCCATCTTCTTCGAGAACCTCTCCTACAGGGTGAACCCGCACACCGGGTACATCG ATTACGATAAGGTAGAGGAGAAGGCCGTGGATTTCCACCCCAAGATTCTCATCTGCGGCG CGAGCTCGTATCCAAGGGATTGGGACTATGCACGGATGCGGCTTGTTGCTGATAAGTGCG GCGCAGTACTCATGTGTGACATGGCACAAATCAGTGGTCTTGTGGCAGCGAAGGAATGTC GAAATCCCTTTGACTACTGCGATATTGTTACTTCAACCACACACAAGAGCTTGAGGGGTC CTAGAGGTGGTATAATATTTTTCAGGAAAGGGAAAAATCTAAGGAAACGGGTCGGATCTT TAACTCAAGTGGTTGAAAATGATCAGTATGATTTTGAGGACCGTATAAATTTTGCTGTTT TCCCTTCAATGCAAGGTGGACCCCACAATAACCATATTGCTGCTCTGGCTATAGCTCTAA AACAAGTAGCCATGCCAGAATTCAAAGCATACATTCAACAAGTCAAGAAAAATGCCCAAG CTTTGGCGATGGCCTTGCTCAGGAGGAAATGCAGACTGGTTACTGGTGGCACAGATAATC ATTTGATGCTCTGGGACCTAAGAACATTTGGCTTGACAGGGAAGAACTTTGAGAAGGTCT GTGAGGCATGTCATATCTCTCTTAATAAAACACCAATATATGGAGATAATGGTTCGATTT CTCCTGGAGGTGTGCGGATTGGAACTCCTGCCATGACAACTAGAGGTTGCTTGGAGAGTG ACTTTGAGATAATGGCAGAATTCCTTTTGAGGGCAGCACATATAGCAAGTATTGTTTTGA AGGAGCATGGAAGGCTTCAGAAGGATTTTCTGAAAGGTCTGGAGAACAATAATGACATTA TTGAACTCCGGAATCAGGTGGAGACATTTGCCTTACAATTTGCCATGCCGGGATTTGATG TATAATATATGAGAGCCCTATATATATTTGCAGCCCTAGGATGGTTCAGATATCATTTGC AACTTGACACATGTTTGAACAAGTGAGTTTATGTGTAAAATGCCGAGTTATCATAGCATC AAGTTAGGAAAGCCATTTTTTCGTTGGAAGTTGATCTCAATCTCCTCTCTCGAGCAATTT TGTACAGGCATGTTGCTTATGTTATTGTATTTATTTATTGCTCTTCATTATATAGATTGC TACGTGAGATAATGTTTCGAAGTTGATGTC