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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0421100-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:20651153:20651824:1 gene:Os05g0421100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0421100-00)
Sequence

ATGGCCGCCGCCGCCGCCACGCCGCGCCACCATCACCGCCTCCTTCTGCTGCTGTTCATC
CTCTTCCTCGCCGCCGGCGCCGCCGTGCCGGTCTCCGGCGCCTGGGACGCCAAGGGGAAG
ACGCTGTGCTCCGGCCGCCTCCTCGGCCTCACCGACTGCGGCGACGAGGAGCCGAGCGCG
TACGAGATGCTGGAGAGGTTCGGGTTCCCGCGCGGCATCCTGCCGGAGGGGGTGACGGGG
TACACGCTCCGGCCGTCGGACGGCGAGTTCGCGGTGTACCTCGGGACGGGGGAGTGCGAG
TTCGAGGTCGACGGCGGGTACCGGCTCACCTACCAGGGGAGGATCACCGGCAGGGTGGCC
GGCGGCAGCATCACCGGCCTCCGCGGCGTCACGGTGAGGGTCTTCATGATGAACTGGGGC
ATCGACCGCGTCGTCGTGGCCGACGCCGACCACCTCGTGTTCTACGTCGGCCCGCTCTCC
CAGGCGTTCCCGGTGGACGGATTCGAGGAATCGCCGCAGTGCCGGTGCCGCCACGGCGGC
GGCGCCGCCGTCTCCGGCGTCGCGGCGATGTAG

Peptide Sequence

PEP ID

Os05t0421100-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:20651153:20651824:1 gene:Os05g0421100 transcript:Os05t0421100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0421100-00)
Sequence

MAAAAATPRHHHRLLLLLFILFLAAGAAVPVSGAWDAKGKTLCSGRLLGLTDCGDEEPSA
YEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGECEFEVDGGYRLTYQGRITGRVA
GGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESPQCRCRHGG
GAAVSGVAAM

Transcript Sequence

Transcript ID

Os05t0421100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:20651153:20651824:1 gene:Os05g0421100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0421100-00)
Sequence

ATCCCTTCACGACTCCTCACCAACAAAATCCCATAAAACCCTCTTCTACACCAACAAACA
AAACTCCAAACGAATTAAGCATCGCGAACCAACGCCGCCATGGCCGCCGCCGCCGCCACG
CCGCGCCACCATCACCGCCTCCTTCTGCTGCTGTTCATCCTCTTCCTCGCCGCCGGCGCC
GCCGTGCCGGTCTCCGGCGCCTGGGACGCCAAGGGGAAGACGCTGTGCTCCGGCCGCCTC
CTCGGCCTCACCGACTGCGGCGACGAGGAGCCGAGCGCGTACGAGATGCTGGAGAGGTTC
GGGTTCCCGCGCGGCATCCTGCCGGAGGGGGTGACGGGGTACACGCTCCGGCCGTCGGAC
GGCGAGTTCGCGGTGTACCTCGGGACGGGGGAGTGCGAGTTCGAGGTCGACGGCGGGTAC
CGGCTCACCTACCAGGGGAGGATCACCGGCAGGGTGGCCGGCGGCAGCATCACCGGCCTC
CGCGGCGTCACGGTGAGGGTCTTCATGATGAACTGGGGCATCGACCGCGTCGTCGTGGCC
GACGCCGACCACCTCGTGTTCTACGTCGGCCCGCTCTCCCAGGCGTTCCCGGTGGACGGA
TTCGAGGAATCGCCGCAGTGCCGGTGCCGCCACGGCGGCGGCGCCGCCGTCTCCGGCGTC
GCGGCGATGTAG