Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0417100-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:20433366:20437932:1 gene:Os05g0417100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5 description:Chloroplast-targeted Deg protease protein, Chloroplast development and maintenance of PSII function under high temperatures (Os05t0417100-01)
Sequence	ATGCTCGCCTCCGTCCGCTCTCTCCGCCGCCTCTCCTCCTCCTCCTCGTCCTCGTCCTTG TCCCCCGCCTCGCTACGCCGCCTCCTCCTCCTCCTCCACCGCCCGCCGCCTCCGCCCCCG CCCCCTCGGCCTCCTCTCCCGCCCTTCCAAACCCTAGCCCGAGGCATCCTGCCGCGCATC GCGGCGCGGCCTGTGCCCCGCCGCTTCTCCACCGCGTCCTGCTCCTCCACGCTCTTCCGC GTGGGGGAATGCGGCGCCCCCGGCGCCACCGCCATACCCGAGGCGGAGCGAGGCGAGGAG GAGGAGCGTGAGGGGGAGGATGGAGGCGAGGCCGACGCGGCGGTGGAGGTGGCGGCGGGG AGGCATGACACGGACGCGTACGCGGCGGTGGAGCTGGCGCTGGACTCGGTGGTGAAGGTT TTCACGGTGTCCAGTAGCCCCAACTACTTCCTGCCGTGGCAGAACAAGGCGCAGCGCGAG AGCATGGGCTCAGGATTTGTAATTCCGGGGAGGAGAATCATCACAAATGCTCATGTTATA GCGGATCATACCTTTGTTCTCGTGAGGAAGCATGGGTCGCCTACTAAGTACAAGGCAGAA GTCCAGGCTGTTGGCCATGAGTGCGACTTGGCTCTTCTGAAAGTTGATAGTGAGGAGTTT TGGGATGGAATGAACAGTTTGGAGCTTGGAGACATTCCCTTCTTGCAGGAAGCAGTTGCT GTGGTTGGCTACCCGCAAGGGGGGGACAACATTTCTGTCACCAAGGGTGTGGTCTCTAGA GTTGAGCCAACACAATATGCACATGGTGCTACTCAGCTCATGGCCATACAAATAGATGCG GCTATCAACCCAGGAAACAGCGGAGGGCCTGCAATTATGGGCGACAAAGTTGCTGGAGTT GCTTTTCAAAATTTATCAGGGGCAGAAAACATTGGGTATATTATACCGGTGCCTGTAATT AAACGTTTCATCTCTGGAGTGGAAGAGAGCGGTAAATATTCTGGTTTTTGTACCCTTGGA ATATCTTGCCAGGCCACAGAGAATATTCAATTAAGAGAGTGCTTTGGGATGAAGCCTGAT TTGACTGGAGTGTTAGTGAGTAGAATAAATCCTCTATCTGATGCTCACAGAGTTCTTAAG AAAGATGACATTCTTCTTGAGTTTGACGGTGTGCCTATAGCAAATGATGGCACAGTCCCA TTTCGAAATAGGGAGAGAATCACCTTCGATCATCTGGTGTCCATGAAGAAGCCTGGGGAA ATGGCGGTTCTCAAAGTTCTAAGAGATGGCAAAGAGCATGAATTGAATGTCACTGTTAGA CCTTTGCAACCTTTAGTCCCTGTACATCAATTTGATAAACTACCCAGCTACTACATCTTT GCTGGTTTTGTTTTCATCCCACTGACCCAGCCTTATCTCCATGAATTTGGAGAAGACTGG TACAACAATTCGCCACGCCGACTGTGTGAACGGGCACTGAGAGAGCTTCCAAAAAAAGCT GCTGAACAACTAGTTATCCTATCTCAGGTTCTCATGGATGATATTAATGTTGGTTATGAA AGGCTCGCTGAACTACAGGTAAAAAAGGTGAACGGTGTGGAAGTAGAAAATCTGAAGCAT CTGTGCAGCCTTGTGGAAAGCTGCACTGAAGAAAACCTGAGATTTGATCTGGACGATGAG CGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAACGG CACAGGATACCGTCGGCCATATCTGCTGACCTCGTCGACGAACAGGCGACTGACGACGGT GAGGAGGCGACTAATGGTGAGATCGAGGCATCATGCACTAGCTAA

Peptide Sequence

PEP ID	Os05t0417100-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:20433366:20437932:1 gene:Os05g0417100 transcript:Os05t0417100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5 description:Chloroplast-targeted Deg protease protein, Chloroplast development and maintenance of PSII function under high temperatures (Os05t0417100-01)
Sequence	MLASVRSLRRLSSSSSSSSLSPASLRRLLLLLHRPPPPPPPPRPPLPPFQTLARGILPRI AARPVPRRFSTASCSSTLFRVGECGAPGATAIPEAERGEEEEREGEDGGEADAAVEVAAG RHDTDAYAAVELALDSVVKVFTVSSSPNYFLPWQNKAQRESMGSGFVIPGRRIITNAHVI ADHTFVLVRKHGSPTKYKAEVQAVGHECDLALLKVDSEEFWDGMNSLELGDIPFLQEAVA VVGYPQGGDNISVTKGVVSRVEPTQYAHGATQLMAIQIDAAINPGNSGGPAIMGDKVAGV AFQNLSGAENIGYIIPVPVIKRFISGVEESGKYSGFCTLGISCQATENIQLRECFGMKPD LTGVLVSRINPLSDAHRVLKKDDILLEFDGVPIANDGTVPFRNRERITFDHLVSMKKPGE MAVLKVLRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLHEFGEDW YNNSPRRLCERALRELPKKAAEQLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKH LCSLVESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADLVDEQATDDG EEATNGEIEASCTS

Transcript Sequence

Transcript ID	Os05t0417100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:20433366:20437932:1 gene:Os05g0417100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5 description:Chloroplast-targeted Deg protease protein, Chloroplast development and maintenance of PSII function under high temperatures (Os05t0417100-01)
Sequence	GACCGCCTCCTGCCCCGCGCCGCGCCGCGCCGCTTCTTCCGGCGAGGCCGCCCCGCCACC ACCATGCTCGCCTCCGTCCGCTCTCTCCGCCGCCTCTCCTCCTCCTCCTCGTCCTCGTCC TTGTCCCCCGCCTCGCTACGCCGCCTCCTCCTCCTCCTCCACCGCCCGCCGCCTCCGCCC CCGCCCCCTCGGCCTCCTCTCCCGCCCTTCCAAACCCTAGCCCGAGGCATCCTGCCGCGC ATCGCGGCGCGGCCTGTGCCCCGCCGCTTCTCCACCGCGTCCTGCTCCTCCACGCTCTTC CGCGTGGGGGAATGCGGCGCCCCCGGCGCCACCGCCATACCCGAGGCGGAGCGAGGCGAG GAGGAGGAGCGTGAGGGGGAGGATGGAGGCGAGGCCGACGCGGCGGTGGAGGTGGCGGCG GGGAGGCATGACACGGACGCGTACGCGGCGGTGGAGCTGGCGCTGGACTCGGTGGTGAAG GTTTTCACGGTGTCCAGTAGCCCCAACTACTTCCTGCCGTGGCAGAACAAGGCGCAGCGC GAGAGCATGGGCTCAGGATTTGTAATTCCGGGGAGGAGAATCATCACAAATGCTCATGTT ATAGCGGATCATACCTTTGTTCTCGTGAGGAAGCATGGGTCGCCTACTAAGTACAAGGCA GAAGTCCAGGCTGTTGGCCATGAGTGCGACTTGGCTCTTCTGAAAGTTGATAGTGAGGAG TTTTGGGATGGAATGAACAGTTTGGAGCTTGGAGACATTCCCTTCTTGCAGGAAGCAGTT GCTGTGGTTGGCTACCCGCAAGGGGGGGACAACATTTCTGTCACCAAGGGTGTGGTCTCT AGAGTTGAGCCAACACAATATGCACATGGTGCTACTCAGCTCATGGCCATACAAATAGAT GCGGCTATCAACCCAGGAAACAGCGGAGGGCCTGCAATTATGGGCGACAAAGTTGCTGGA GTTGCTTTTCAAAATTTATCAGGGGCAGAAAACATTGGGTATATTATACCGGTGCCTGTA ATTAAACGTTTCATCTCTGGAGTGGAAGAGAGCGGTAAATATTCTGGTTTTTGTACCCTT GGAATATCTTGCCAGGCCACAGAGAATATTCAATTAAGAGAGTGCTTTGGGATGAAGCCT GATTTGACTGGAGTGTTAGTGAGTAGAATAAATCCTCTATCTGATGCTCACAGAGTTCTT AAGAAAGATGACATTCTTCTTGAGTTTGACGGTGTGCCTATAGCAAATGATGGCACAGTC CCATTTCGAAATAGGGAGAGAATCACCTTCGATCATCTGGTGTCCATGAAGAAGCCTGGG GAAATGGCGGTTCTCAAAGTTCTAAGAGATGGCAAAGAGCATGAATTGAATGTCACTGTT AGACCTTTGCAACCTTTAGTCCCTGTACATCAATTTGATAAACTACCCAGCTACTACATC TTTGCTGGTTTTGTTTTCATCCCACTGACCCAGCCTTATCTCCATGAATTTGGAGAAGAC TGGTACAACAATTCGCCACGCCGACTGTGTGAACGGGCACTGAGAGAGCTTCCAAAAAAA GCTGCTGAACAACTAGTTATCCTATCTCAGGTTCTCATGGATGATATTAATGTTGGTTAT GAAAGGCTCGCTGAACTACAGGTAAAAAAGGTGAACGGTGTGGAAGTAGAAAATCTGAAG CATCTGTGCAGCCTTGTGGAAAGCTGCACTGAAGAAAACCTGAGATTTGATCTGGACGAT GAGCGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAA CGGCACAGGATACCGTCGGCCATATCTGCTGACCTCGTCGACGAACAGGCGACTGACGAC GGTGAGGAGGCGACTAATGGTGAGATCGAGGCATCATGCACTAGCTAACATTGTTTTGCA TACTTAGCTAGGCAATTACCTGCGGAAGAATAGATAGATATTAGCACGGTTCAATTTCCA GAGACAGACGCAGTGAGGCGAGGACTGCCCGGAGCACTGCGCTGGTTGCAGCGGCTCCTG TTCGGCCGTCTCAGTTTTGACGTGAGGGGTGGGTGCTCCGGTTTCCCTCAGCAAATAAGA AGTGAAGAACCCAAGTTCTTCAGCCTCATGATATGTTGTAACACAAATTATCTTCCCCAT TTCTTCCCAATATTTCTCATTCTTTCACCAAAAGTGCCGTGGCACAGTCACCTCATATTG AACTCAGATTATATATATCATCACGAAACAGAGCATATGAAACAGGAGTTACAAAGTTTA CAGCTCGATGAAAATCCACAATAAGTTTCTTATGTACTTTCTTGGTAAATTATCACCCTT GCTGTTAATCCCTCCATTTCATATTAT