Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0413400-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:20210370:20213455:1 gene:Os05g0413400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-01);Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-02)
Sequence

ATGGCGGCGGCGGCGCGCTCCCTCGCGCTGCTCTCGACCGCCTCCGCGTCCCTCGGCCTC
GGCGTCGCGCGCTCCTCCGCCCGCCCTCGGTCCCCGTTTGGGCGGGGCCTCGCCCTCCGC
GGCCTGTCGTCGTCCTCGTCCTCCTTCGCCGCCACCGCCGCGGTGATGGGGAAGGCCGGC
ACCGCGGAAGCCGCCGACGCCGGGATGGACGCCGTCCAGCAGCGGCTCATGTTCGAGGAC
GAGTGTATTTTAGTGGACGAACAGGACAACGTCATTGGCCATGATTCCAAGTATAACTGC
CATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTT
TTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCA
CTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAA
GATAAAAGCCTAGGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATA
CAAGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCT
CCATCTGATGGAAAATGGGGCGAACATGAACTGGACTACCTCCTATTCATGGTTCGTGAT
GTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAG
CTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGG
TTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACT
CTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAG

Peptide Sequence

PEP ID

Os05t0413400-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:20210370:20213455:1 gene:Os05g0413400 transcript:Os05t0413400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-01);Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-02)
Sequence

MAAAARSLALLSTASASLGLGVARSSARPRSPFGRGLALRGLSSSSSSFAATAAVMGKAG
TAEAADAGMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFL
FNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGI
QAEELPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDE
LKELLKKADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHKL

Transcript Sequence

Transcript ID

Os05t0413400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:20210370:20213455:1 gene:Os05g0413400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-01);Similar to Isopentenyl diphosphate isomerase 1. (Os05t0413400-02)
Sequence

CCCGCCGCGCGCGCGCGCACCCGAGCTCCCGCTCCCTCCCCTCCGATGGCGGCGGCGGCG
CGCTCCCTCGCGCTGCTCTCGACCGCCTCCGCGTCCCTCGGCCTCGGCGTCGCGCGCTCC
TCCGCCCGCCCTCGGTCCCCGTTTGGGCGGGGCCTCGCCCTCCGCGGCCTGTCGTCGTCC
TCGTCCTCCTTCGCCGCCACCGCCGCGGTGATGGGGAAGGCCGGCACCGCGGAAGCCGCC
GACGCCGGGATGGACGCCGTCCAGCAGCGGCTCATGTTCGAGGACGAGTGTATTTTAGTG
GACGAACAGGACAACGTCATTGGCCATGATTCCAAGTATAACTGCCATCTCATGGAAAAG
ATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATAT
GAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAAC
ACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGGG
GTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGCTGAAGAACTA
CCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCTGATGGAAAA
TGGGGCGAACATGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGGAGCTCAGCCCG
AATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTC
AAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTT
GACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATC
GACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAAT
AAAGAATTGTTGCTTTAACCTTTTCACG