Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0409000-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:19968873:19973524:-1 gene:Os05g0409000 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBA-like domain containing protein. (Os05t0409000-01)
Sequence

CTCGCCCTCGTCTCCCCCCCTCTTTCTACAGCCATCCGCGCCCCGCCCCCCCGCGTCAAC
CAAACCCTAACTCGCCCAAATCCGCCTCTCGATCTCGCCTCCGCCGTCCGCCGCCGCCGC
CGCCGCCGCCGGCCGCCAAAACCCTACCGCCTCTCGTCGCCTCCGTCCGCCGCAGACGCG
CCCGGTATACAACAGGGTGATCGTCGGTTGAAAATGCCATCTGCATCCAAATCCAAGTCC
AAAGACAGGTCAGCTGCCAAGGCACCAAAAGAGCAACCTAAGGTTGCAGCAAAGCCTATG
GGGAATGGCACAGTTGCAAGTGCCTATAACAACTTCTCTGGAAAATTCCATCTGTTGGAG
CCATCATCTTCTTTGCTGGTTAGCCAGGGCAATGACAAATTAAGGAATACAGACGAGATA
GATGAACATTCTCGTAGCTCCCATGGTACAGGAGACTTTGATTGTGCCTCTAACAATGGT
AGCTGTTCTGGTGAGTCAGAAGATCCAAAGGAAAAATCAACGAGTACTGCACCTCGAGTG
GACTCTGTTCCAGGATGTGATGTCGATAAACGTGAGAAGATCAGACAGAAGAATGAGAAG
AAGCATCAAAGGCAGAAGGAGAGGCGTGCCCAGGAGTTACATGAGCGCTGCAAGGGATAC
CTAATGTCGAGAAAGCTAGAGGCACTTGCGCAGAAGCTTGTTGCTATGGGTTTCTCATCA
GATCAAGCAACAATGGCCCTTATACAGAATGAGGGCTGCCTTGAAGAGTCTGTTGCCTGG
CTATGCAGCTTTGATGGAAGTGAGGAAGCCAAACAGCAAACAGCAGCAGATCAACAACCT
GGGGTTAATTTGAAGATTGATATAACTGATGAACTTGCAAAGATTGCGACCCTGGAGGTT
AAATTCAAGTGTACAAAGCAAGAGATTGAAAGGGCTGTTGTTTCTTCCGAGGGTGATCTA
GAAAAGGCTGAAGAGGTTTTGAAGACACAGAAGCAAGAATCAACAGCAACTGCATCTAAG
CCTGAAGGATCTGGCGATTCAAGTGGCTTGGCTAACAAAGCGCAGCTAATGCTTGCACAG
AACCCAACTAGGCCTCAAACAAATGGATTTTCTTCAGTTGGGGCTCAGCAAATGAGGAGA
GATGAGAAGGACTTAAACTACAAGCTTTTGTTAAATGGTAGTGGTCCAAAGGAACATGCA
GTTAAAGGGTTTCAACCATTGGCACCATCTGTTAAGCCAGAGATGGGCCGACCACAATTT
GTTCAACCTGAGAAAAGGCGGCTTAATGCTAATTCGGTTCCATCGGTTTCTTACATCACA
TCATCCCCTTTACCTGTTGCAGCACCTCAAATAAAGTCTGAAACGCGACATGTGGCAGGG
GGCAATGAGGTGAAAAATGCAATGCATAATGGAAACTTGAGAGAGTCGGTAGTTGTAATG
CAGCGTCCCCAATCTGCAGCTGCCAAACAAAGCCTGCCATCTACAAGCCATAGTATGTTT
GCGTCAGAACCTCCAAGGGAATGGTACTTAAATGGTGCATCAGGTGTGGATATGATGTTG
AATGGTGGTTTAGGTCATGGCCTAAGAAATATGAGCTTGGATGGTGTTAATTCTTCCAAG
CAGTTTGTGCATGCAAACCATCAACAAAGTTTTGTTTCCAATCCTATAGATCTGGCTGCT
AATGGTTGGGGTGGTACCTGGGGCTCTGGAGGTACATCATCTTCCCTTGGTGCGGCTTCA
TCACTTGGGTTGTTTCGAGGATGGAGCTCGTCCGAGTCGTCTTCATCTCTATCTCGTCCT
GATTGGAGAACTAATGGGCCTTCACCATGTGACTACACCTCAATAGACTGGAGCCTTGAC
ACAACGTTGTTAAACCCTGCAGCGAAGAGTGAATGGCTGTCCGACACATGGTCAACCATG
TTCATGGGTGGCAGATCCACAAGACCATCTGGGAACCTTGGTGGTCCAGGCATTGCTGGG
TTACATGAAAGCAATTTTCCAATGGATCCTTCTCCATCACCCCGACCCTATGATTGGCCT
TCTTTCTGCAGGGGAGGATCTTCCTAG

Peptide Sequence

PEP ID

Os05t0409000-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:19968873:19973524:-1 gene:Os05g0409000 transcript:Os05t0409000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBA-like domain containing protein. (Os05t0409000-01)
Sequence

LALVSPPLSTAIRAPPPRVNQTLTRPNPPLDLASAVRRRRRRRRPPKPYRLSSPPSAADA
PGIQQGDRRLKMPSASKSKSKDRSAAKAPKEQPKVAAKPMGNGTVASAYNNFSGKFHLLE
PSSSLLVSQGNDKLRNTDEIDEHSRSSHGTGDFDCASNNGSCSGESEDPKEKSTSTAPRV
DSVPGCDVDKREKIRQKNEKKHQRQKERRAQELHERCKGYLMSRKLEALAQKLVAMGFSS
DQATMALIQNEGCLEESVAWLCSFDGSEEAKQQTAADQQPGVNLKIDITDELAKIATLEV
KFKCTKQEIERAVVSSEGDLEKAEEVLKTQKQESTATASKPEGSGDSSGLANKAQLMLAQ
NPTRPQTNGFSSVGAQQMRRDEKDLNYKLLLNGSGPKEHAVKGFQPLAPSVKPEMGRPQF
VQPEKRRLNANSVPSVSYITSSPLPVAAPQIKSETRHVAGGNEVKNAMHNGNLRESVVVM
QRPQSAAAKQSLPSTSHSMFASEPPREWYLNGASGVDMMLNGGLGHGLRNMSLDGVNSSK
QFVHANHQQSFVSNPIDLAANGWGGTWGSGGTSSSLGAASSLGLFRGWSSSESSSSLSRP
DWRTNGPSPCDYTSIDWSLDTTLLNPAAKSEWLSDTWSTMFMGGRSTRPSGNLGGPGIAG
LHESNFPMDPSPSPRPYDWPSFCRGGSS

Transcript Sequence

Transcript ID

Os05t0409000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19968873:19973524:-1 gene:Os05g0409000 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBA-like domain containing protein. (Os05t0409000-01)
Sequence

GCTCGCCCTCGTCTCCCCCCCTCTTTCTACAGCCATCCGCGCCCCGCCCCCCCGCGTCAA
CCAAACCCTAACTCGCCCAAATCCGCCTCTCGATCTCGCCTCCGCCGTCCGCCGCCGCCG
CCGCCGCCGCCGGCCGCCAAAACCCTACCGCCTCTCGTCGCCTCCGTCCGCCGCAGACGC
GCCCGGTATACAACAGGGTGATCGTCGGTTGAAAATGCCATCTGCATCCAAATCCAAGTC
CAAAGACAGGTCAGCTGCCAAGGCACCAAAAGAGCAACCTAAGGTTGCAGCAAAGCCTAT
GGGGAATGGCACAGTTGCAAGTGCCTATAACAACTTCTCTGGAAAATTCCATCTGTTGGA
GCCATCATCTTCTTTGCTGGTTAGCCAGGGCAATGACAAATTAAGGAATACAGACGAGAT
AGATGAACATTCTCGTAGCTCCCATGGTACAGGAGACTTTGATTGTGCCTCTAACAATGG
TAGCTGTTCTGGTGAGTCAGAAGATCCAAAGGAAAAATCAACGAGTACTGCACCTCGAGT
GGACTCTGTTCCAGGATGTGATGTCGATAAACGTGAGAAGATCAGACAGAAGAATGAGAA
GAAGCATCAAAGGCAGAAGGAGAGGCGTGCCCAGGAGTTACATGAGCGCTGCAAGGGATA
CCTAATGTCGAGAAAGCTAGAGGCACTTGCGCAGAAGCTTGTTGCTATGGGTTTCTCATC
AGATCAAGCAACAATGGCCCTTATACAGAATGAGGGCTGCCTTGAAGAGTCTGTTGCCTG
GCTATGCAGCTTTGATGGAAGTGAGGAAGCCAAACAGCAAACAGCAGCAGATCAACAACC
TGGGGTTAATTTGAAGATTGATATAACTGATGAACTTGCAAAGATTGCGACCCTGGAGGT
TAAATTCAAGTGTACAAAGCAAGAGATTGAAAGGGCTGTTGTTTCTTCCGAGGGTGATCT
AGAAAAGGCTGAAGAGGTTTTGAAGACACAGAAGCAAGAATCAACAGCAACTGCATCTAA
GCCTGAAGGATCTGGCGATTCAAGTGGCTTGGCTAACAAAGCGCAGCTAATGCTTGCACA
GAACCCAACTAGGCCTCAAACAAATGGATTTTCTTCAGTTGGGGCTCAGCAAATGAGGAG
AGATGAGAAGGACTTAAACTACAAGCTTTTGTTAAATGGTAGTGGTCCAAAGGAACATGC
AGTTAAAGGGTTTCAACCATTGGCACCATCTGTTAAGCCAGAGATGGGCCGACCACAATT
TGTTCAACCTGAGAAAAGGCGGCTTAATGCTAATTCGGTTCCATCGGTTTCTTACATCAC
ATCATCCCCTTTACCTGTTGCAGCACCTCAAATAAAGTCTGAAACGCGACATGTGGCAGG
GGGCAATGAGGTGAAAAATGCAATGCATAATGGAAACTTGAGAGAGTCGGTAGTTGTAAT
GCAGCGTCCCCAATCTGCAGCTGCCAAACAAAGCCTGCCATCTACAAGCCATAGTATGTT
TGCGTCAGAACCTCCAAGGGAATGGTACTTAAATGGTGCATCAGGTGTGGATATGATGTT
GAATGGTGGTTTAGGTCATGGCCTAAGAAATATGAGCTTGGATGGTGTTAATTCTTCCAA
GCAGTTTGTGCATGCAAACCATCAACAAAGTTTTGTTTCCAATCCTATAGATCTGGCTGC
TAATGGTTGGGGTGGTACCTGGGGCTCTGGAGGTACATCATCTTCCCTTGGTGCGGCTTC
ATCACTTGGGTTGTTTCGAGGATGGAGCTCGTCCGAGTCGTCTTCATCTCTATCTCGTCC
TGATTGGAGAACTAATGGGCCTTCACCATGTGACTACACCTCAATAGACTGGAGCCTTGA
CACAACGTTGTTAAACCCTGCAGCGAAGAGTGAATGGCTGTCCGACACATGGTCAACCAT
GTTCATGGGTGGCAGATCCACAAGACCATCTGGGAACCTTGGTGGTCCAGGCATTGCTGG
GTTACATGAAAGCAATTTTCCAATGGATCCTTCTCCATCACCCCGACCCTATGATTGGCC
TTCTTTCTGCAGGGGAGGATCTTCCTAGTTTCCCCTACCCTGTAGGTAAGAAGCCATCGA
ATAAAACAAAGTAAAAGATGTTATTTGTTTCTGTTCTTGTTTTGGTCTCAGATCCAGTTG
GTTGACAAGTTTTACATGTGTATTGAACCGTGTTTGTGTATCCTCGACTGTTGGCCGAGA
TTAGTCATCTTTCTGTGTATGCTGTGCATGAAAAATGAAGGAAGAAATTGAAGATATCTT
GGCTTAAAAACGGACGCCCCTATCTCTCTGAACAAATAGCTCACCAATTGTTCTTTGGTG
ATCTGTTGCTTTACTTGTTCTGTCTTGCGAATGCTGTTTTTTTTTGGGGGGGTGGGGCTG
AGGGAGGGGGTTCATTCCAATGAAGTACTCCTATGTGTTTGTTTTTGGGGCTAACGGATC
TTTTGCTTCTACCACTAGGTAATTCAAATATTGTTTAGATGGCTTCATGACTCTCTCTTT
GTTTTACATCATTTGTTATTTTACCC