Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0408900-04
CDS Infomation	cds chromosome:IRGSP-1.0:5:19957184:19963002:-1 gene:Os05g0408900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1 description:Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-01);Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-02);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-03);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-04)
Sequence	ATGGCGCTCACGACGTTCTCCATTTCGAGAGGAGGCTTCGTCGGCGCGCTGCCGCAGGAG GGGCATTTCGCTCCGGCGGCGGCGGAGCTCAGTCTCCACAAGCTCCAGAGCAGGCCACAC AAGGCTAGGCGGAGGTCGTCGTCGAGCATCTCGGCGTCGCTGTCCACGGAGAGGGAGGCG GCGGAGTACCACTCGCAGCGGCCACCGACGCCGCTGCTGGACACGGTCAACTACCCCATC CACATGAAGAACCTGTCCCTCAAGGAGCTCCAGCAGCTCGCCGACGAGCTCCGCTCCGAC GTCATCTTCCACGTCTCCAAGACCGGGGGACATCTCGGGTCCAGCCTCGGCGTCGTCGAG CTCACCGTCGCGCTCCACTACGTGTTCAACACGCCTCAGGACAAGATCCTCTGGGACGTC GGCCACCAGTCGTACCCTCACAAGATTCTGACCGGGCGGCGCGACAAGATGCCGACGATG CGTCAGACCAACGGCTTGTCGGGATTCACCAAGCGGTCGGAGAGCGAGTACGACTCCTTC GGCACCGGCCACAGCTCCACCACCATCTCCGCCGCCCTCGGGATGGCGGTGGGGAGGGAT CTCAAGGGAGGGAAGAACAACGTGGTGGCGGTGATCGGCGACGGCGCCATGACGGCCGGG CAGGCGTACGAGGCGATGAATAACGCGGGGTATCTCGACTCCGATATGATCGTGATTCTC AACGACAACAAGCAGGTGTCGCTGCCGACGGCGACGCTCGACGGGCCGGCGCCGCCGGTG GGCGCGCTCAGCAGCGCCCTCAGCAAGCTGCAGTCCAGCCGCCCACTCAGGGAGCTCAGG GAGGTGGCAAAGGGCGTGACGAAGCAAATCGGAGGGTCGGTGCACGAGCTGGCGGCGAAG GTGGACGAGTACGCCCGCGGCATGATCAGCGGCTCCGGCTCGACGCTCTTCGAGGAGCTC GGCCTCTACTACATCGGCCCCGTCGACGGCCACAACATCGACGACCTCATCACCATCCTC CGCGAGGTCAAGAGCACCAAGACCACAGGCCCGGTGCTCATCCACGTCGTCACCGAGAAA GGCCGCGGCTACCCCTACGCCGAGCGCGCCGCCGACAAGTACCACGGCGTGGCGAAGTTC GATCCGGCGACGGGGAAGCAGTTCAAGTCGCCGGCGAAGACGCTGTCGTACACGAACTAC TTCGCGGAGGCGCTCATCGCCGAGGCGGAGCAGGACAACAGGGTCGTGGCCATCCACGCG GCCATGGGGGGAGGCACGGGGCTCAACTACTTCCTCCGCCGCTTCCCGAACCGGTGCTTC GACGTCGGGATCGCCGAGCAGCACGCCGTCACGTTCGCCGCCGGCCTCGCCTGCGAGGGC CTCAAGCCGTTCTGCGCCATCTACTCCTCCTTCCTGCAGAGAGGCTACGACCAGGTGGTG CACGACGTGGACCTCCAGAAGCTGCCGGTGAGGTTCGCCATGGACAGGGCCGGGCTCGTG GGCGCCGACGGGCCGACGCACTGCGGCGCGTTCGACGTCACCTACATGGCGTGCCTGCCG AACATGGTCGTCATGGCCCCGTCCGACGAGGCGGAGCTCTGCCACATGGTCGCCACCGCC GCGGCCATCGACGACCGCCCCTCCTGCTTCCGCTACCCAAGAGGCAACGGCATCGGCGTC CCGCTACCACCCAACTACAAAGGCGTTCCCCTCGAGGTAGGCAAAGGGAGGGTACTGCTG GAGGGCGAGAGGGTGGCGCTGCTTGGGTACGGTTCGGCGGTGCAGTACTGCCTCGCCGCA GCGTCGCTGGTGGAGCGGCACGGCCTCAAGGTGACCGTCGCCGACGCGAGGTTCTGCAAG CCGCTGGACCAAACGCTCATCAGGAGGCTGGCCAGCTCCCACGAGGTGCTCCTCACCGTC GAGGAAGGCTCCATCGGCGGGTTCGGCTCCCACGTCGCGCAGTTCATGGCCCTCGACGGC CTCCTCGACGGCAAACTCAAGTGGCGGCCGCTGGTGCTACCCGACAGGTACATCGACCAC GGGTCACCGGCGGATCAGCTGGCGGAGGCAGGGCTGACGCCGTCGCACATCGCGGCGACG GTGTTCAACGTGCTGGGCCAGGCGAGGGAGGCGCTCGCCATCATGACGGTGCCCAACGCG TAG

Peptide Sequence

PEP ID	Os05t0408900-04
PEP Infomation	pep chromosome:IRGSP-1.0:5:19957184:19963002:-1 gene:Os05g0408900 transcript:Os05t0408900-04 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1 description:Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-01);Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-02);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-03);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-04)
Sequence	MALTTFSISRGGFVGALPQEGHFAPAAAELSLHKLQSRPHKARRRSSSSISASLSTEREA AEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVE LTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSF GTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL NDNKQVSLPTATLDGPAPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAAK VDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEK GRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHA AMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVV HDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATA AAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAA ASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDG LLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMTVPNA

Transcript Sequence

Transcript ID	Os05t0408900-04
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:19957184:19963002:-1 gene:Os05g0408900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1 description:Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-01);Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-02);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-03);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-04)
Sequence	ATCTCCTCACTCTCTAGCTTGCTCCAGTTTCGCGTAGCTGCGTGACAGTTCAATTGAACT CTCTGGATTCGTTGGTTACTTCGTCTGAGCTGCTGCAGCGTTGAGGAGGAGGAGGAGCAA TGGCGCTCACGACGTTCTCCATTTCGAGAGGAGGCTTCGTCGGCGCGCTGCCGCAGGAGG GGCATTTCGCTCCGGCGGCGGCGGAGCTCAGTCTCCACAAGCTCCAGAGCAGGCCACACA AGGCTAGGCGGAGGTCGTCGTCGAGCATCTCGGCGTCGCTGTCCACGGAGAGGGAGGCGG CGGAGTACCACTCGCAGCGGCCACCGACGCCGCTGCTGGACACGGTCAACTACCCCATCC ACATGAAGAACCTGTCCCTCAAGGAGCTCCAGCAGCTCGCCGACGAGCTCCGCTCCGACG TCATCTTCCACGTCTCCAAGACCGGGGGACATCTCGGGTCCAGCCTCGGCGTCGTCGAGC TCACCGTCGCGCTCCACTACGTGTTCAACACGCCTCAGGACAAGATCCTCTGGGACGTCG GCCACCAGTCGTACCCTCACAAGATTCTGACCGGGCGGCGCGACAAGATGCCGACGATGC GTCAGACCAACGGCTTGTCGGGATTCACCAAGCGGTCGGAGAGCGAGTACGACTCCTTCG GCACCGGCCACAGCTCCACCACCATCTCCGCCGCCCTCGGGATGGCGGTGGGGAGGGATC TCAAGGGAGGGAAGAACAACGTGGTGGCGGTGATCGGCGACGGCGCCATGACGGCCGGGC AGGCGTACGAGGCGATGAATAACGCGGGGTATCTCGACTCCGATATGATCGTGATTCTCA ACGACAACAAGCAGGTGTCGCTGCCGACGGCGACGCTCGACGGGCCGGCGCCGCCGGTGG GCGCGCTCAGCAGCGCCCTCAGCAAGCTGCAGTCCAGCCGCCCACTCAGGGAGCTCAGGG AGGTGGCAAAGGGCGTGACGAAGCAAATCGGAGGGTCGGTGCACGAGCTGGCGGCGAAGG TGGACGAGTACGCCCGCGGCATGATCAGCGGCTCCGGCTCGACGCTCTTCGAGGAGCTCG GCCTCTACTACATCGGCCCCGTCGACGGCCACAACATCGACGACCTCATCACCATCCTCC GCGAGGTCAAGAGCACCAAGACCACAGGCCCGGTGCTCATCCACGTCGTCACCGAGAAAG GCCGCGGCTACCCCTACGCCGAGCGCGCCGCCGACAAGTACCACGGCGTGGCGAAGTTCG ATCCGGCGACGGGGAAGCAGTTCAAGTCGCCGGCGAAGACGCTGTCGTACACGAACTACT TCGCGGAGGCGCTCATCGCCGAGGCGGAGCAGGACAACAGGGTCGTGGCCATCCACGCGG CCATGGGGGGAGGCACGGGGCTCAACTACTTCCTCCGCCGCTTCCCGAACCGGTGCTTCG ACGTCGGGATCGCCGAGCAGCACGCCGTCACGTTCGCCGCCGGCCTCGCCTGCGAGGGCC TCAAGCCGTTCTGCGCCATCTACTCCTCCTTCCTGCAGAGAGGCTACGACCAGGTGGTGC ACGACGTGGACCTCCAGAAGCTGCCGGTGAGGTTCGCCATGGACAGGGCCGGGCTCGTGG GCGCCGACGGGCCGACGCACTGCGGCGCGTTCGACGTCACCTACATGGCGTGCCTGCCGA ACATGGTCGTCATGGCCCCGTCCGACGAGGCGGAGCTCTGCCACATGGTCGCCACCGCCG CGGCCATCGACGACCGCCCCTCCTGCTTCCGCTACCCAAGAGGCAACGGCATCGGCGTCC CGCTACCACCCAACTACAAAGGCGTTCCCCTCGAGGTAGGCAAAGGGAGGGTACTGCTGG AGGGCGAGAGGGTGGCGCTGCTTGGGTACGGTTCGGCGGTGCAGTACTGCCTCGCCGCAG CGTCGCTGGTGGAGCGGCACGGCCTCAAGGTGACCGTCGCCGACGCGAGGTTCTGCAAGC CGCTGGACCAAACGCTCATCAGGAGGCTGGCCAGCTCCCACGAGGTGCTCCTCACCGTCG AGGAAGGCTCCATCGGCGGGTTCGGCTCCCACGTCGCGCAGTTCATGGCCCTCGACGGCC TCCTCGACGGCAAACTCAAGTGGCGGCCGCTGGTGCTACCCGACAGGTACATCGACCACG GGTCACCGGCGGATCAGCTGGCGGAGGCAGGGCTGACGCCGTCGCACATCGCGGCGACGG TGTTCAACGTGCTGGGCCAGGCGAGGGAGGCGCTCGCCATCATGACGGTGCCCAACGCGT AGCAGATGCGTGGCGCCTCTGGTAGAGACAATGCTTTGTACATGTAGAGATCAGTGAATT GTATATTAGTCGGCGTCGGGATAAATATTGATTAGTGATGCTGAGGGGAACAGTTACAGT TTTTTTGCTCTTCAGTTGTTCGTGGACGGAGACCCGGCTGCTCGATGTTCGATCGCTTGT ATATCTAAGAAATGTTGTAAGTGGATAGATTTATTGATCATGATAAGGATTAGTCGGGTA TT