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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0404400-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:19691349:19694288:-1 gene:Os05g0404400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-01);Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-02)
Sequence

ATGTACAGCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCCG
CCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCTG
GTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGTG
GCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGGT
TCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAAG
GAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGCC
ACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATAT
GCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCCG
GACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCGG
GCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCCT
CTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGAT
ACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGA

Peptide Sequence

PEP ID

Os05t0404400-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:19691349:19694288:-1 gene:Os05g0404400 transcript:Os05t0404400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-01);Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-02)
Sequence

MYSPLGSGCAFAAAASSAFPPATVPGGIFAGRRRRRPARLVLAWASSDGSDGGGAAAGAV
AAEASAVGESKEGEVASGGGSSAESSAEKKPAPVDPKIEKELKKAVQKTAATFAPRASTA
TKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLR
ARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRSE

Transcript Sequence

Transcript ID

Os05t0404400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19691349:19694288:-1 gene:Os05g0404400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-01);Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1). (Os05t0404400-02)
Sequence

ATTCCCCATCTCTTCCACCATCTCTCCTCTCCCTCCCCACAAGAAAAACCTCGCGCGAAC
AATGTACAGCCCTCTCGGCAGCGGCTGCGCGTTCGCGGCCGCGGCCAGCTCCGCGTTCCC
GCCGGCCACCGTCCCCGGCGGGATATTCGCGGGGAGGAGGAGGAGGAGGCCGGCGAGGCT
GGTTCTTGCGTGGGCGAGCTCGGATGGCTCGGACGGTGGTGGTGCCGCCGCTGGTGCAGT
GGCGGCCGAGGCTTCCGCTGTGGGAGAGAGCAAAGAAGGGGAGGTGGCCAGTGGCGGAGG
TTCTTCCGCTGAGTCGTCGGCGGAGAAGAAGCCGGCTCCTGTTGATCCCAAGATTGAGAA
GGAGCTCAAGAAGGCAGTTCAGAAGACCGCAGCAACGTTTGCACCAAGGGCGTCCACTGC
CACAAAGAACCCTGCAGTGCCTGGAACAGCTCTGTACACTATCTTTGAGGTCCAGGGATA
TGCCTCCATGCTGTTGGGTGGAGCCCTTTCCTTCAATCTCGTGTTCCCGTCGAATGAGCC
GGACATTTGGAGGCTGATGGGAATGTGGTCCATCTGGATGTTCACTATACCTTCTCTTCG
GGCCCGTGACTGCTCAAGTAAGGAGAAAGAGGCTCTCAACTACTTGTTTCTACTGGTCCC
TCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGA
TACGGTTGCATTCTTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTG
AACAATTTCCTGAACGAAGGAGCATTTGAACTGCAAATTTTGCCTAAGTGAATTTTGGAG
GGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATGGAGTGTA
AAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGG
GCATCTCTCAACCTGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAA
ACGGTTGCCAATTGCATCTGCTTCGTTCTTGGGGCTACAATTCGCAACTGAATTTGCTAT
ATATTTGTCGACAAATTTTCCACCAAAAATTTAACAGATGTAATTATAGTACAATCGTAG
TGTAATTACACTGTAACTTGCATGTAATTACACTGTAATTATAATGTAACATGTATGTAA
CTTTTAAAAATCTCTCCATAACATTTATTTCGGTAAAATGGAGGTTGTGAG