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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0400200-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:19470226:19475222:1 gene:Os05g0400200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein Ty1-copia subclass. (Os05t0400200-00)
Sequence

ATGGCGCTGCTTCGCTGCCTCCTCGTCGTCCTCGCCGTCGTCGTGGCCTCCGCTGGGCTC
TCCTTGGCCGAGGAGAACACCGGCGGCGCGGGACGGCAAGTGTCCCCGTCGCCGGCGCCG
TCGACAGGGAAGCACCCGTGCCTGGACAACTCGCCGAACATGACGGAGAAGACGGGTGGG
GAGGCCGGCGAGGTCGTCCACGACTACGGCGGCCTGGAGTGCTACGTCACCGGCTCCCGC
CGCTCCGGCCGCGCCATCATCCTCGTCTCTGACTATTACGGTTTCCGAGCACCAAAGCTG
AGACAAATAGCGGACAAAGTTGCATACTCCGGATACTACGTTGTGGTTCCTGATTTGTTG
TACGGTGACCCTTACACGGATGATCCAGCAAGGCCATTTTGGGTGTGGATCATGGCTCAC
TCTCCGGAGGAAGCAGCTGAAAAGACTAAACCGCTCATTGCGGTTCTGAAGAAGGAAGGG
ATGTCCTCTGTTGGGGTTGGAGGTTATTGCTGGGGTGGAAAGGTGGCCGTGGAACTATCA
AAGACCGAAGAAACCCAAGCGGTAGTCATTTCACATCCTTCGCTAGTGACCGTACATGAC
ATGACAGAGGTCAAACGTCCAATTGAGATTCTTGGAGGTGAGCGTGATACCATCACGCCA
CCACTTGTTGTGCACCAGTTTGAGCATGCCTTAGATCAGAACAACAGGAGCGCACCATCA
CATGGCTACAGGAAAGGTTTTGGCCATGCATCTCAAAATTCACAAATCATGTTCGAGTAA

Peptide Sequence

PEP ID

Os05t0400200-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:19470226:19475222:1 gene:Os05g0400200 transcript:Os05t0400200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein Ty1-copia subclass. (Os05t0400200-00)
Sequence

MALLRCLLVVLAVVVASAGLSLAEENTGGAGRQVSPSPAPSTGKHPCLDNSPNMTEKTGG
EAGEVVHDYGGLECYVTGSRRSGRAIILVSDYYGFRAPKLRQIADKVAYSGYYVVVPDLL
YGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVGVGGYCWGGKVAVELS
KTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVHQFEHALDQNNRSAPS
HGYRKGFGHASQNSQIMFE

Transcript Sequence

Transcript ID

Os05t0400200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19470226:19475222:1 gene:Os05g0400200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Retrotransposon protein Ty1-copia subclass. (Os05t0400200-00)
Sequence

ATGGCGCTGCTTCGCTGCCTCCTCGTCGTCCTCGCCGTCGTCGTGGCCTCCGCTGGGCTC
TCCTTGGCCGAGGAGAACACCGGCGGCGCGGGACGGCAAGTGTCCCCGTCGCCGGCGCCG
TCGACAGGGAAGCACCCGTGCCTGGACAACTCGCCGAACATGACGGAGAAGACGGGTGGG
GAGGCCGGCGAGGTCGTCCACGACTACGGCGGCCTGGAGTGCTACGTCACCGGCTCCCGC
CGCTCCGGCCGCGCCATCATCCTCGTCTCTGACTATTACGGTTTCCGAGCACCAAAGCTG
AGACAAATAGCGGACAAAGTTGCATACTCCGGATACTACGTTGTGGTTCCTGATTTGTTG
TACGGTGACCCTTACACGGATGATCCAGCAAGGCCATTTTGGGTGTGGATCATGGCTCAC
TCTCCGGAGGAAGCAGCTGAAAAGACTAAACCGCTCATTGCGGTTCTGAAGAAGGAAGGG
ATGTCCTCTGTTGGGGTTGGAGGTTATTGCTGGGGTGGAAAGGTGGCCGTGGAACTATCA
AAGACCGAAGAAACCCAAGCGGTAGTCATTTCACATCCTTCGCTAGTGACCGTACATGAC
ATGACAGAGGTCAAACGTCCAATTGAGATTCTTGGAGGTGAGCGTGATACCATCACGCCA
CCACTTGTTGTGCACCAGTTTGAGCATGCCTTAGATCAGAACAACAGGAGCGCACCATCA
CATGGCTACAGGAAAGGTTTTGGCCATGCATCTCAAAATTCACAAATCATGTTCGAGTAA