Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0399300-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:19426767:19427874:1 gene:Os05g0399300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 2 description:Similar to Chitinase. (Os05t0399300-01)
Sequence

TGCCCCGCGCGCGGGTTCTACACCTACGAGGCCTTCCTCGCCGCCGCCGCCGCGTTCCCG
GCGTTCGGCGGCACCGGCAACACCGAGACGCGGAAGCGGGAGGTCGCCGCGTTCCTGGGC
CAGACCTCCCACGAGACCACCGGCGGGTGGCCGACCGCGCCCGACGGCCCCTTCTCCTGG
GGCTACTGCTTCAAGCAGGAGCAGAACCCGCCGTCCGACTACTGCCAGCCCTCGCCGGAG
TGGCCGTGCGCCCCCGGCCGCAAGTACTACGGCCGCGGCCCCATCCAACTCTCCTTCAAC
TTCAACTACGGGCCGGCGGGGAGGGCGATCGGGGTGGACCTGCTGAGCAACCCGGACCTG
GTGGCGACGGACGCGACGGTGTCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCAG
GGGAACAAGCCGTCGAGCCACGACGTGATCACGGGGCGGTGGGCGCCCTCGCCGGCCGAC
GCCGCGGCGGGGCGGGCGCCGGGGTACGGCGTGATCACCAACATCGTCAACGGCGGGCTG
GAGTGCGGGCACGGCCCCGACGACCGCGTGGCGAACCGGATCGGCTTCTACCAGCGCTAC
TGTGGCGCGTTCGGCATCGGCACCGGCGGCAACCTCGACTGCTACAACCAGAGGCCGTTC
AACAGCGGCTCGTCGGTTGGGTTGGCGGAGCAGTGA

Peptide Sequence

PEP ID

Os05t0399300-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:19426767:19427874:1 gene:Os05g0399300 transcript:Os05t0399300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 2 description:Similar to Chitinase. (Os05t0399300-01)
Sequence

CPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSW
GYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDL
VATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGL
ECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPFNSGSSVGLAEQ

Transcript Sequence

Transcript ID

Os05t0399300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19426767:19427874:1 gene:Os05g0399300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 2 description:Similar to Chitinase. (Os05t0399300-01)
Sequence

GTGCCCCGCGCGCGGGTTCTACACCTACGAGGCCTTCCTCGCCGCCGCCGCCGCGTTCCC
GGCGTTCGGCGGCACCGGCAACACCGAGACGCGGAAGCGGGAGGTCGCCGCGTTCCTGGG
CCAGACCTCCCACGAGACCACCGGCGGGTGGCCGACCGCGCCCGACGGCCCCTTCTCCTG
GGGCTACTGCTTCAAGCAGGAGCAGAACCCGCCGTCCGACTACTGCCAGCCCTCGCCGGA
GTGGCCGTGCGCCCCCGGCCGCAAGTACTACGGCCGCGGCCCCATCCAACTCTCCTTCAA
CTTCAACTACGGGCCGGCGGGGAGGGCGATCGGGGTGGACCTGCTGAGCAACCCGGACCT
GGTGGCGACGGACGCGACGGTGTCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCA
GGGGAACAAGCCGTCGAGCCACGACGTGATCACGGGGCGGTGGGCGCCCTCGCCGGCCGA
CGCCGCGGCGGGGCGGGCGCCGGGGTACGGCGTGATCACCAACATCGTCAACGGCGGGCT
GGAGTGCGGGCACGGCCCCGACGACCGCGTGGCGAACCGGATCGGCTTCTACCAGCGCTA
CTGTGGCGCGTTCGGCATCGGCACCGGCGGCAACCTCGACTGCTACAACCAGAGGCCGTT
CAACAGCGGCTCGTCGGTTGGGTTGGCGGAGCAGTGACGACTGACGACGAGAAAAATAAA
AAATAAAATGGAAACATTTGCACGGCCGCATCCGCATGTGCCGGTGAATTGAACGAGCTC
CATCATGCATGATAGTTCAGTTCACGATGCTAATAATAAAGCTGGGCTATGAATAAATTA
ATCGTAGTATAGTAAATTGGTATAAATTGTAGGCGGTGGGATGTTTGGTTACAAGATCAA
CGGAACAATCGCGTGAAAGGAAACATAAAAACCCGGATACTGAGACAATTGCGAAAACTA
TTATAGAGAAGATTTAATC