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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0397650-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:19340923:19345332:-1 gene:Os05g0397650 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-8, RING-HC protein 8 description:Similar to zinc finger (C3HC4-type RING finger) family protein. (Os05t0397650-00)
Sequence

ATGGGTGGCTCGTCCTCCACCAGCCGGCGCCGCCGCGACGAGTACTACGCGGCCCGGCCC
CCGCCGCCGCCGCACCACTACTACACCTACCCACCGCCCCCTCCTCCGCCGCCGCACCAC
CACCACCACCCGCCGCCACCGCCTCCCCCGCCGCACCACCACCACCAGCACCCCTACCGG
CCTCCGCCGCCGCCGCACCACGCCACCTCGTCCTCCTCGTACTACTACCACCACCCGCCG
CCCCCGCACGCCTACCACGGCCCGTGGCACCCCGCGCCGCGCCCGCCGCACCCGGAGCAG
CCCGCGCTGACGGGGCCGCCGCCCGAGTTCGTGGATCACCAGCAGGCGCGGAAGGTGAAG
AACGACGTCAACCTGCACAAGGACACCATCCGGCTCGTGCCCGACGTCACGGACCCCGAC
CGACGCCTCGTCGCCTTCACCTTCGACGCCGTGACCGACGGCAGCATAACTATTTATTAC
TTTGGCAAGGAAGGAAAAAACTGTACTTTCTCTTCAGTATATCCAGAATTACAAACACCT
ACAAAGATACCTTTCCAGAAAGGATTGGCTCAAAAGTTTGTCCAGACCTCTGGATCTGGT
GTTGATTTGGGATTCTTTTCTCTGGATGAGCTTTCAAATCCTTCTGGAGAAGTATTCCCA
CTGGTAGTTTATGCAGAAGCTTGTCCACCTCCAGAGGAAAGTCACCAGCCTAACTCCACT
AGGGCACAAATTACTCTTGCTGTTATAGAGAAGCATCACAATGACCTTCGAGTTAAAGTT
GTCAAGCAAATGTTGTGGAGTGATGGCGAGAAGTATGAGCTACAAGAAATTTATGGGATT
GTCAACTCGACTGAAGCTGATGTTCCCGACGCAGATGATAGTGATATGGGGAAAGAATGT
GTCATCTGCTTGACAGAGCCAAGGGACACAGCTGTTTTTCCATGTAGGCATTTGTGCATG
TGCAGTGAATGTGCAAAAACTCTAAGGTTTCAAACAGATAAATGCCCCATATGCAGACAA
CCTGTTGAGAAATTAATGGAGATCAAAGTTAGAAGTCCCGAGCCATAA

Peptide Sequence

PEP ID

Os05t0397650-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:19340923:19345332:-1 gene:Os05g0397650 transcript:Os05t0397650-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-8, RING-HC protein 8 description:Similar to zinc finger (C3HC4-type RING finger) family protein. (Os05t0397650-00)
Sequence

MGGSSSTSRRRRDEYYAARPPPPPHHYYTYPPPPPPPPHHHHHPPPPPPPPHHHHQHPYR
PPPPPHHATSSSSYYYHHPPPPHAYHGPWHPAPRPPHPEQPALTGPPPEFVDHQQARKVK
NDVNLHKDTIRLVPDVTDPDRRLVAFTFDAVTDGSITIYYFGKEGKNCTFSSVYPELQTP
TKIPFQKGLAQKFVQTSGSGVDLGFFSLDELSNPSGEVFPLVVYAEACPPPEESHQPNST
RAQITLAVIEKHHNDLRVKVVKQMLWSDGEKYELQEIYGIVNSTEADVPDADDSDMGKEC
VICLTEPRDTAVFPCRHLCMCSECAKTLRFQTDKCPICRQPVEKLMEIKVRSPEP

Transcript Sequence

Transcript ID

Os05t0397650-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19340923:19345332:-1 gene:Os05g0397650 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-8, RING-HC protein 8 description:Similar to zinc finger (C3HC4-type RING finger) family protein. (Os05t0397650-00)
Sequence

TCCACCCCTCCCCTCGCGTCAACACCACCGCGCGCACGCGCTGCTCCTGCTCCCCCCACA
ACGCGACGCGCCTAAGCAAACCTCATCTTCTTCTTCTTCCTCGCTTCCTTCCTCCACCTC
CACGCGGCGAATCCACCAGGTGTGCCATGGGTGGCTCGTCCTCCACCAGCCGGCGCCGCC
GCGACGAGTACTACGCGGCCCGGCCCCCGCCGCCGCCGCACCACTACTACACCTACCCAC
CGCCCCCTCCTCCGCCGCCGCACCACCACCACCACCCGCCGCCACCGCCTCCCCCGCCGC
ACCACCACCACCAGCACCCCTACCGGCCTCCGCCGCCGCCGCACCACGCCACCTCGTCCT
CCTCGTACTACTACCACCACCCGCCGCCCCCGCACGCCTACCACGGCCCGTGGCACCCCG
CGCCGCGCCCGCCGCACCCGGAGCAGCCCGCGCTGACGGGGCCGCCGCCCGAGTTCGTGG
ATCACCAGCAGGCGCGGAAGGTGAAGAACGACGTCAACCTGCACAAGGACACCATCCGGC
TCGTGCCCGACGTCACGGACCCCGACCGACGCCTCGTCGCCTTCACCTTCGACGCCGTGA
CCGACGGCAGCATAACTATTTATTACTTTGGCAAGGAAGGAAAAAACTGTACTTTCTCTT
CAGTATATCCAGAATTACAAACACCTACAAAGATACCTTTCCAGAAAGGATTGGCTCAAA
AGTTTGTCCAGACCTCTGGATCTGGTGTTGATTTGGGATTCTTTTCTCTGGATGAGCTTT
CAAATCCTTCTGGAGAAGTATTCCCACTGGTAGTTTATGCAGAAGCTTGTCCACCTCCAG
AGGAAAGTCACCAGCCTAACTCCACTAGGGCACAAATTACTCTTGCTGTTATAGAGAAGC
ATCACAATGACCTTCGAGTTAAAGTTGTCAAGCAAATGTTGTGGAGTGATGGCGAGAAGT
ATGAGCTACAAGAAATTTATGGGATTGTCAACTCGACTGAAGCTGATGTTCCCGACGCAG
ATGATAGTGATATGGGGAAAGAATGTGTCATCTGCTTGACAGAGCCAAGGGACACAGCTG
TTTTTCCATGTAGGCATTTGTGCATGTGCAGTGAATGTGCAAAAACTCTAAGGTTTCAAA
CAGATAAATGCCCCATATGCAGACAACCTGTTGAGAAATTAATGGAGATCAAAGTTAGAA
GTCCCGAGCCATAAAGACACCTTCGCTGTATGCTGCCCGTGTTGCGGATCCTCAAATAAT
GAGCTGGAATGGTGTATGAGAAGCTTCGATCTGGTCGTGATGCTTCTTTTTTGTTTCTGG
CGAACTGCTGAAGGTGCCTTTGGAAATTTTGGCAAGTTTTCCCGGTGTACAGAACATGTA
AATGGTACGGGGCATGTCCATTAACCACGATGTACAGTTCTCTAAGCT