Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0395000-03
CDS Infomation	cds chromosome:IRGSP-1.0:5:19222117:19224289:-1 gene:Os05g0395000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os05t0395000-01);Virulence factor, pectin lyase fold family protein. (Os05t0395000-03)
Sequence	ATGGCGCCGCCGCTCTATCTCCTCCTCCTCCTCCCGCTCCTCGCCTGCGCCGACGAGGTC CCTGACCGCTACGCCGTCCTCCGCGCCCCGCAGGGCCCGGGTGCCAGCGCGGCGGCCAAG GAGTACCTCGACCCGACCTTCCCGCTCCCCGCGCCCCCGCCGGCGGCGCCGTCCTGCACC GTGCCGGTCCTCTCCTACTCCTTCGGCGACACCTACGGCGCCGCGCCGGCCAAGGCCTCG TACGCGCCCCCCGCCGGGTGCCCCGCGCCCTGGTCCCTCGTCGTGCTCACCTTCTCCGCC TCCTGCGCCGGCGACCAGTACGACCGCGTCGCCGCCGTCTGGCTCGACGGCGCCGAGCTC CTCCGGACCACCACCGCGGAGCCGACCCCCGAGGGCGTCCGCTGGACCGTCCGCAAGGAT GTCACCCGCTACTCCGCGCTCCTCCGCTCCCCGCCCGGCGGCGTCCTCTCCGTCATGCTC GAGAACGTCGTCAACGACAAGTACACCGGGGTGTACAGCGTCAACGTCTCGCTGGAGTTC CATGGAACTCCGCCGTACCTCTCCGACGCGGCATCATCCTCCCCTGCTGGCGTCGCAAGC AACGATCCCAAGGAACCTATGCTGCCGGAGTCATACTTCCAGCCGGCGGATCTCATCGTC CCGATCTCGGATGTCGCCGGCAACGGCAAGGGCGGGTTCTGGTTCCGCATCCAGAACGCG TCGGACTCGCACTCCAGGCTCGTAACCATTCCGTCGAGCACCTACCGTGCGGTGCTCGAG GTGTTCGTGTCCCCTCACTCCAACGACGAGTACTGGTACTCCAACCCGCCGGACATCTAC ATCAGGGAGAACAACCTCACCACGCGGAGGGGCAACGCGGCGTACCGCGAGGTCGTCGTC AGCGTGGACCACCGCTTCGTCGGCTCGTTCGTGCCGTTCCCGGTCATCTACACGGGCGGC ATCAACCCGCTCTTCTGGCAGCCGGTGGCCGCGCTCGGCGCGTTCGACCTGCCCACCTAC GACGTCGAGCTCACCCCATTCCTCGGCCTCCTGGTCGACAGCAACGCCCACGAGATCGGC CTCAGCGTGTTCGACGGCATCGCCGAGTGGCTCGTCGACGCCAACCTGCACCTCTGGCTG GACCCCAGCACGTCGGACGTGCACGCCGCGCTCGGCGCGTACCAGACGCCGCGCCTGAAA ATCTCACGCCACTACTCGACGCGGCTGCTCGAGGGCAGGTTCAAGATCAAGGCCAAGAGG AAGTCCTCCTTCAGCGGCTGGGTCAAGTCCTCGTTCGGCAACTTCACCACGGAGGTGGAG GCGGAGCTGAAGGCGACCAGCCTGGTGGAGTTCACCGGCGACGGCCGGAACAAGACCGTG TCGCTGGAGGCGAAGCAGGAGACGAAGACGCTGATCCGGGCGGGCGACACGCGGAAGGTG ATCGGCAGGGTGGAGAGGGAGGCCAAGTACCCGCTGTCGCTCTTCGCGGAGACCGAGGAC GGCGAGAACGGCACGTCCGTCGTCACGGTGAGCCTCACCCACGGCCTCAGCGTGGAGACG GAGGTCGAGACGAAGGCCCTCGAGAGCAAGGAGAAGCTCGATGACGCGCAGGCCGCGCAA GGGTGGATGGTGCTCCTGGACCACGACGTGCTCAACGGGTCGGTGACGACGACCCAGGCG TACCGGTTCAGCGACGACGAGCGGGAGTACGAGCGGGCGATCGACGTCGTGGACGGCGCC GTGCTCAGCGACAACGTCACCGAGAGCTTCAGCGCCCTGGCCGCCGCAGCGGCGGACGCT CGCCGCCGCCGGTTCCACGCCGGCATTGCTGCGTTGTAA

Peptide Sequence

PEP ID	Os05t0395000-03
PEP Infomation	pep chromosome:IRGSP-1.0:5:19222117:19224289:-1 gene:Os05g0395000 transcript:Os05t0395000-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os05t0395000-01);Virulence factor, pectin lyase fold family protein. (Os05t0395000-03)
Sequence	MAPPLYLLLLLPLLACADEVPDRYAVLRAPQGPGASAAAKEYLDPTFPLPAPPPAAPSCT VPVLSYSFGDTYGAAPAKASYAPPAGCPAPWSLVVLTFSASCAGDQYDRVAAVWLDGAEL LRTTTAEPTPEGVRWTVRKDVTRYSALLRSPPGGVLSVMLENVVNDKYTGVYSVNVSLEF HGTPPYLSDAASSSPAGVASNDPKEPMLPESYFQPADLIVPISDVAGNGKGGFWFRIQNA SDSHSRLVTIPSSTYRAVLEVFVSPHSNDEYWYSNPPDIYIRENNLTTRRGNAAYREVVV SVDHRFVGSFVPFPVIYTGGINPLFWQPVAALGAFDLPTYDVELTPFLGLLVDSNAHEIG LSVFDGIAEWLVDANLHLWLDPSTSDVHAALGAYQTPRLKISRHYSTRLLEGRFKIKAKR KSSFSGWVKSSFGNFTTEVEAELKATSLVEFTGDGRNKTVSLEAKQETKTLIRAGDTRKV IGRVEREAKYPLSLFAETEDGENGTSVVTVSLTHGLSVETEVETKALESKEKLDDAQAAQ GWMVLLDHDVLNGSVTTTQAYRFSDDEREYERAIDVVDGAVLSDNVTESFSALAAAAADA RRRRFHAGIAAL

Transcript Sequence

Transcript ID	Os05t0395000-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:19222117:19224289:-1 gene:Os05g0395000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os05t0395000-01);Virulence factor, pectin lyase fold family protein. (Os05t0395000-03)
Sequence	GCGTCGCGGCGGCCGCAGAGGATGGCGCCGCCGCTCTATCTCCTCCTCCTCCTCCCGCTC CTCGCCTGCGCCGACGAGGTCCCTGACCGCTACGCCGTCCTCCGCGCCCCGCAGGGCCCG GGTGCCAGCGCGGCGGCCAAGGAGTACCTCGACCCGACCTTCCCGCTCCCCGCGCCCCCG CCGGCGGCGCCGTCCTGCACCGTGCCGGTCCTCTCCTACTCCTTCGGCGACACCTACGGC GCCGCGCCGGCCAAGGCCTCGTACGCGCCCCCCGCCGGGTGCCCCGCGCCCTGGTCCCTC GTCGTGCTCACCTTCTCCGCCTCCTGCGCCGGCGACCAGTACGACCGCGTCGCCGCCGTC TGGCTCGACGGCGCCGAGCTCCTCCGGACCACCACCGCGGAGCCGACCCCCGAGGGCGTC CGCTGGACCGTCCGCAAGGATGTCACCCGCTACTCCGCGCTCCTCCGCTCCCCGCCCGGC GGCGTCCTCTCCGTCATGCTCGAGAACGTCGTCAACGACAAGTACACCGGGGTGTACAGC GTCAACGTCTCGCTGGAGTTCCATGGAACTCCGCCGTACCTCTCCGACGCGGCATCATCC TCCCCTGCTGGCGTCGCAAGCAACGATCCCAAGGAACCTATGCTGCCGGAGTCATACTTC CAGCCGGCGGATCTCATCGTCCCGATCTCGGATGTCGCCGGCAACGGCAAGGGCGGGTTC TGGTTCCGCATCCAGAACGCGTCGGACTCGCACTCCAGGCTCGTAACCATTCCGTCGAGC ACCTACCGTGCGGTGCTCGAGGTGTTCGTGTCCCCTCACTCCAACGACGAGTACTGGTAC TCCAACCCGCCGGACATCTACATCAGGGAGAACAACCTCACCACGCGGAGGGGCAACGCG GCGTACCGCGAGGTCGTCGTCAGCGTGGACCACCGCTTCGTCGGCTCGTTCGTGCCGTTC CCGGTCATCTACACGGGCGGCATCAACCCGCTCTTCTGGCAGCCGGTGGCCGCGCTCGGC GCGTTCGACCTGCCCACCTACGACGTCGAGCTCACCCCATTCCTCGGCCTCCTGGTCGAC AGCAACGCCCACGAGATCGGCCTCAGCGTGTTCGACGGCATCGCCGAGTGGCTCGTCGAC GCCAACCTGCACCTCTGGCTGGACCCCAGCACGTCGGACGTGCACGCCGCGCTCGGCGCG TACCAGACGCCGCGCCTGAAAATCTCACGCCACTACTCGACGCGGCTGCTCGAGGGCAGG TTCAAGATCAAGGCCAAGAGGAAGTCCTCCTTCAGCGGCTGGGTCAAGTCCTCGTTCGGC AACTTCACCACGGAGGTGGAGGCGGAGCTGAAGGCGACCAGCCTGGTGGAGTTCACCGGC GACGGCCGGAACAAGACCGTGTCGCTGGAGGCGAAGCAGGAGACGAAGACGCTGATCCGG GCGGGCGACACGCGGAAGGTGATCGGCAGGGTGGAGAGGGAGGCCAAGTACCCGCTGTCG CTCTTCGCGGAGACCGAGGACGGCGAGAACGGCACGTCCGTCGTCACGGTGAGCCTCACC CACGGCCTCAGCGTGGAGACGGAGGTCGAGACGAAGGCCCTCGAGAGCAAGGAGAAGCTC GATGACGCGCAGGCCGCGCAAGGGTGGATGGTGCTCCTGGACCACGACGTGCTCAACGGG TCGGTGACGACGACCCAGGCGTACCGGTTCAGCGACGACGAGCGGGAGTACGAGCGGGCG ATCGACGTCGTGGACGGCGCCGTGCTCAGCGACAACGTCACCGAGAGCTTCAGCGCCCTG GCCGCCGCAGCGGCGGACGCTCGCCGCCGCCGGTTCCACGCCGGCATTGCTGCGTTGTAA GGCTACCTTGGATTGCCGTGGGAGTTGAGCTGTTTCGTGTCATCGATGGCTACGGAATCC AGGTGAAATTCGTCAGTTCGAAGAATTCTTATGTGCAGGATTCGTTTCCGACCGCATCGA CGTGACCAAGACTATTGCTTTTCTTCAGAGGTAAATTGTGCACTGTAATTTGTATTTAGC GTATAGTTTCTGTAATCTGTATTATGTATGCAATTTTGTCGGTGTGAATCGTCGTTTCTG CTTTTGCAGTTCAAATTTTGGTTGTGTTTGTCTTAATAAAAACGAAATAAAGCTGGAAAT TGCAGATTACTAC