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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0393200-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:19124235:19128438:1 gene:Os05g0393200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to structural constituent of ribosome. (Os05t0393200-00)
Sequence

ATGCTCCGGCCATTCCCCTCCTCCAACCGCACCGCCGCCGCCGCCGCCGTCGCCGTCGCC
GCCGCCCCCTTCGCCGCCGCGTCGGCGATGCCCCACCCGTCGTCGTCCTCCCGGTCGGCG
GGCGGCGGGCACCACGTGCCGTCGGTCTACCCGCCGCCGCCGTCGTCGTCGTCGTCGTCG
GCGTGCAGGCACACGCCGTCGTCGGCGACGCTCGATCTCCTCATCCTGCTGCTCGTGCTC
TTCTCGGTCGCGTTCCTGCTCGCCTCCTCGCTCGCGCACGTCTCGCGCTCGCTGACCCCG
CTGCTCGCCTCGCCCCCGGCCGCCGCGGCGCTCGCCTCCGCGGCGGCCGCGATGCCCTAC
CTCGGCGCCGCGGCGGCGCTCGCCGGGGCGACCTTCCTCTCCTGCAGCCGCCTCCCTCGC
CGCCGCTGCCGCAACCCGCGGTGCCGGGGCCTCGTGAAGGCGCTCGAGTTCGATGTCCAG
CTCCAGACCGAGGAGGCCGTGCGCGCAGGCACGGGGAGCACCAGTGGCGGCGCCGACGCC
GCCATGTGGCGCGAGATCGAGGCGCTGCCGTGGAAGGGCGGGCAGGGTGGGAACAACCCG
GATTACGAGTGCCTCCGCGCGGAGCTACGGCGGATGGCTCCACCAAACGGCCGGGCTGTA
CTGCTCTTCCGCAACCGGTGTGGATGTCCCATTGCTAAGCTGGAGGGCTGGGGTGTTCCA
AAGAGCAAGCGCCGAAGCAAGAGGAGCACACTGGGCTTGCCAGCCGATGGAGGGGTCCGG
TGA

Peptide Sequence

PEP ID

Os05t0393200-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:19124235:19128438:1 gene:Os05g0393200 transcript:Os05t0393200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to structural constituent of ribosome. (Os05t0393200-00)
Sequence

MLRPFPSSNRTAAAAAVAVAAAPFAAASAMPHPSSSSRSAGGGHHVPSVYPPPPSSSSSS
ACRHTPSSATLDLLILLLVLFSVAFLLASSLAHVSRSLTPLLASPPAAAALASAAAAMPY
LGAAAALAGATFLSCSRLPRRRCRNPRCRGLVKALEFDVQLQTEEAVRAGTGSTSGGADA
AMWREIEALPWKGGQGGNNPDYECLRAELRRMAPPNGRAVLLFRNRCGCPIAKLEGWGVP
KSKRRSKRSTLGLPADGGVR

Transcript Sequence

Transcript ID

Os05t0393200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:19124235:19128438:1 gene:Os05g0393200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to structural constituent of ribosome. (Os05t0393200-00)
Sequence

CCACCGCCCCCCGGCGCCGGCCGCGTCATGCTCCGGCCATTCCCCTCCTCCAACCGCACC
GCCGCCGCCGCCGCCGTCGCCGTCGCCGCCGCCCCCTTCGCCGCCGCGTCGGCGATGCCC
CACCCGTCGTCGTCCTCCCGGTCGGCGGGCGGCGGGCACCACGTGCCGTCGGTCTACCCG
CCGCCGCCGTCGTCGTCGTCGTCGTCGGCGTGCAGGCACACGCCGTCGTCGGCGACGCTC
GATCTCCTCATCCTGCTGCTCGTGCTCTTCTCGGTCGCGTTCCTGCTCGCCTCCTCGCTC
GCGCACGTCTCGCGCTCGCTGACCCCGCTGCTCGCCTCGCCCCCGGCCGCCGCGGCGCTC
GCCTCCGCGGCGGCCGCGATGCCCTACCTCGGCGCCGCGGCGGCGCTCGCCGGGGCGACC
TTCCTCTCCTGCAGCCGCCTCCCTCGCCGCCGCTGCCGCAACCCGCGGTGCCGGGGCCTC
GTGAAGGCGCTCGAGTTCGATGTCCAGCTCCAGACCGAGGAGGCCGTGCGCGCAGGCACG
GGGAGCACCAGTGGCGGCGCCGACGCCGCCATGTGGCGCGAGATCGAGGCGCTGCCGTGG
AAGGGCGGGCAGGGTGGGAACAACCCGGATTACGAGTGCCTCCGCGCGGAGCTACGGCGG
ATGGCTCCACCAAACGGCCGGGCTGTACTGCTCTTCCGCAACCGGTGTGGATGTCCCATT
GCTAAGCTGGAGGGCTGGGGTGTTCCAAAGAGCAAGCGCCGAAGCAAGAGGAGCACACTG
GGCTTGCCAGCCGATGGAGGGGTCCGGTGAACAAAAGTCTGTTGGCCCCAATGGCAACAT
TGTTGCTTCAGGCTGCCATAGGGTGGAAACTGTTCAAATAATATACTTCCAGTGAAAAGA
TACACCGATTACAAGTGGTTGTGCCATGTTTGTATTGTAAGGCGGGATTGGTTGAAATCT
CAAAGAAACACTGAAAAAGAAACAAACAGATGCAATAATAAAAGAACTGTGAAAAGGAAT
AAAAACATTGGATAT