Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0389800-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:18872363:18875789:-1 gene:Os05g0389800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8). (Os05t0389800-01)
Sequence	ATGGCGGCGAGCGATGATGGCCAGCTCAGGACGTGGGTCTCCGACCGCCTCATGGCGCTC CTCGGATACTCCCAGGGCCTCGTGGCGCGGCTTGTCGTCCGCCTCGCGCGGGAGTGCGCC TCCGCGGGTGACCTCGCGGCGCGGCTCGTCGACCTCGCCGGGTTCCCGCCTTCCCCCGAC ACCGCCGCGTTCGCCGAGGACGTGTACGGGAGGGTGCCCCGCAGTTGCGGCGGCGGCGGC GACGACGCCGGGGTCAGCGAGTACCAGAGGCAGATGCAGGAGGCTGCGGCGATGGCCAAG AAGCAGAGCACCATCAAGCTGCTCGACGACGACGGCGAGATCGGCGTTTCCGCGTCGCCC TCCAGCGGCGGCAGGAAGCGTTTCAGGAGGAAGGCCGTGGGCGAAGACGATGACGATGCC GGACGGAACGCGCGACGGCGGCGTAGCCCGGACGACGAGGAGGAGGACGGCGACGCCGGC GAGGAAGAAGAGATGGAGCGGGATCAGATCGAGAGGGCGCAGCTCGAGCGGAACATCAGG GAGCGCGACGCGGCGAGCACGAGGAGGCTGACGGATCGGAAGACGACCAAGCGGGAGCAG GGCGAGCTCGCGCGCCGGTCGGACGCCATGGACAAGAACGACACCTCGGGGCTCAGGAGG CTCTCCCGGCGCGCGTACCTGCAGAGGCGGAAGGAGAAGAAGGTCGAGGAGATGCGCGAC GAGATCGTCGACCACGAGTTCCTCTTCCCCGGCGTCCAGCTGACGGCCGCCGAGGAGAGG GACATGAGGCACAAGAAGCAAGTCTACGGCCTCGTGCACGATCGCGACGACTACTACAGA ATGCCGGACGCCTACGACGCCGCCGCGAACGTCGATCAGGAGAAGAGGTTCTCGGTGGCG CGGCGGCGGTACGAGGAGCCAGCTGAGGCGGCGAGGGACGGCAAGACGGCGAACGCCTTG TCCGAGCAGGAGGCCTGGGAGGAGCAGCAGATACGGAAGTCGAGGCTGCAGTTCGGATCC ATGGATCGCGGCCGGCGCGGCGACGAGTACGAGCTCCTGTTCGACGACGGCGTCGAGTTC GTCAGGTCGACGGTGATGGCGGGCACCGCGCCTGCAGACGACGACGACACGGCGGCGGCG GCGGCGGCCGACGAGTACCATGCCGAGGCCATGGATGCCAAGGCCACGTTGCAAGACGAG AGGAAGACTCTCCCGGTGTACAAGCTCAAGGACGACCTGCTCAAGGCCATCGACGAGCAC AAGGTCCTGATCGTCGTCGGCGAGACCGGCTCCGGCAAGACGACGCAGATACCGCAGTAC CTCCACGAGGTCGGGTACACGGCGGGGGGGAGGAAGAAGGTGGCGTGCACGCAGCCGCGG CGCGTGGCGGCGATGAGCGTGGCGGCGAGGGTGGCGGAGGAGATGGGCGTCAAGCTCGGG CACGAGGTCGGCTACTCCATCCGGTTCGAGGACTGCACGTCGGAGAAGACGGTGATCAAG TACATGACCGACGGGATGCTCCTCCGCGAGTTCCTCGGCGAGCCCGACCTGGGCAGCTAC AGCGTCGTCGTCGTCGACGAGGCCCACGAGCGGACGCTCGCCACCGACATCCTCTTCGGC CTCGTCAAGGACATCGCCCGCCTCCGCCCTGACATGAAGCTGCTCATCTCCAGCGCGACG CTCAACGCCGACAAGTTCAGCGACTTCTTCGACGCGGCGCCCGTCTTCCGGATCCCCGGG CGGCGGTTCGAGGTGGGCATCCACTACACCGTGGCGCCGGAGGCGGACTACATCGACGCC GCCGTCGTGACGGTGCTGCAGCTGCACGTCACGGAGCCCCCCGGCGGCGGCGACATCCTG CTGTTCCTCACGGGGCAGGAGGAGATCGAGACGGTGGAGGAGATCCTGAGGCATCGGCTG CGGGTGCTCGGCGGCAAGGTGGCGGAGCTGGTGATCTGCCCCATCTACGCCAACCTCCCC GCCGAGCTGCAGGCCAAGATCTTCGAGCCGGCGCCGGCGGGCGCGCGCAAGGTGGTGCTC GCCACCAACATCGCCGAGACGTCGCTGACCATCGACGGGATCAAGTACGTGGTCGACCCG GGGTTCTGCAAGGTGAAGTCGTACAACCCGCGCACCGGGATGGAGTCGCTGTTGGTGGCG CCGGTGTCGAGGGCGTCGGCGGAGCAGCGCGCCGGCCGGTCGGGGCGCACCGGGCCGGGC GAGTGCTTCCGGCTCTACACGGAGTACAACTTCGTCAGCGACCTCGACGACGACGCGGTG CCGGAGATCCAGCGGAGCAACCTCGCCAGCGTCGTGCTGGCGCTCAAGGCGCTCGGGATC AACGACCTCGTCGGCTTCGACTTCATGGACCCGCCGCCGGCGGAGTCGCTGCTCAGGGCG CTGGAGGAGCTCTTCGCCCTCGGCGCGCTCAACAGCCGCGGCGAGCTCACCAAGACCGGG AGGAGGATGGCGGAGTTCCCCCTGGACCCCATGCTCTCCAAGGCCATCGTCGCGTCGGAG AGGTACGGGTGCTCCGAGGAGGTGATCACCATCGCGGCCATGCTGTCCGCCGGGAACGCC GTCTTCTACCGCCCAAGGGACAAGCGGGTCCACGCCGACGCCGCACGGCGGGCGTTCCAC GCCGGCAACGCCGGCGACCACGTCGCGCTGCTCAACGTGTACAACGCGTGGGCGGAGTCC GGCTACTCGCCGCAGTGGTGCCGCGAGAGCTTCGTGCAGCACCGCACCATGCGGCGCGCG CGGGACGTGCGGGACCAGCTGGGGGCGCTGCTTGAGCGGGTGGAGATCGCGCCGTGCTCC TCCGCCGGCGGCGGCGACCTCGACGCGGTCAGGAAGGCGGTCACGGCGGGCTACTTCCGC CACGCTGCGCGGCTGCAGAGGGACGGGTCGTACCGCGCCGTGAAGAGCCGGCAGACGGTG TTCGTCCACCCGAGCTCCGGGGTGGCGCAGGCGCCGCCGCGGTGGGCGTTGTACCACGAG CTGGTGCTCACGACCAAGGAGTACATGAGGCAGGTGACGGAGCTCAAGCCGGAGTGGCTG GTGGAGATCGCGCCGCACTACTACGAGCGCAAGGACGTCGACGAGCCTGAGCCCAAGAAG ACGGCGGCGGCGACTACGCCGCAAGAGCAGACGACGGCCGGCTCTACACCAACGAAGCAG ACTCCGAATCTGAATAGTTTCTTCGACGTGTAA

Peptide Sequence

PEP ID	Os05t0389800-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:18872363:18875789:-1 gene:Os05g0389800 transcript:Os05t0389800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8). (Os05t0389800-01)
Sequence	MAASDDGQLRTWVSDRLMALLGYSQGLVARLVVRLARECASAGDLAARLVDLAGFPPSPD TAAFAEDVYGRVPRSCGGGGDDAGVSEYQRQMQEAAAMAKKQSTIKLLDDDGEIGVSASP SSGGRKRFRRKAVGEDDDDAGRNARRRRSPDDEEEDGDAGEEEEMERDQIERAQLERNIR ERDAASTRRLTDRKTTKREQGELARRSDAMDKNDTSGLRRLSRRAYLQRRKEKKVEEMRD EIVDHEFLFPGVQLTAAEERDMRHKKQVYGLVHDRDDYYRMPDAYDAAANVDQEKRFSVA RRRYEEPAEAARDGKTANALSEQEAWEEQQIRKSRLQFGSMDRGRRGDEYELLFDDGVEF VRSTVMAGTAPADDDDTAAAAAADEYHAEAMDAKATLQDERKTLPVYKLKDDLLKAIDEH KVLIVVGETGSGKTTQIPQYLHEVGYTAGGRKKVACTQPRRVAAMSVAARVAEEMGVKLG HEVGYSIRFEDCTSEKTVIKYMTDGMLLREFLGEPDLGSYSVVVVDEAHERTLATDILFG LVKDIARLRPDMKLLISSATLNADKFSDFFDAAPVFRIPGRRFEVGIHYTVAPEADYIDA AVVTVLQLHVTEPPGGGDILLFLTGQEEIETVEEILRHRLRVLGGKVAELVICPIYANLP AELQAKIFEPAPAGARKVVLATNIAETSLTIDGIKYVVDPGFCKVKSYNPRTGMESLLVA PVSRASAEQRAGRSGRTGPGECFRLYTEYNFVSDLDDDAVPEIQRSNLASVVLALKALGI NDLVGFDFMDPPPAESLLRALEELFALGALNSRGELTKTGRRMAEFPLDPMLSKAIVASE RYGCSEEVITIAAMLSAGNAVFYRPRDKRVHADAARRAFHAGNAGDHVALLNVYNAWAES GYSPQWCRESFVQHRTMRRARDVRDQLGALLERVEIAPCSSAGGGDLDAVRKAVTAGYFR HAARLQRDGSYRAVKSRQTVFVHPSSGVAQAPPRWALYHELVLTTKEYMRQVTELKPEWL VEIAPHYYERKDVDEPEPKKTAAATTPQEQTTAGSTPTKQTPNLNSFFDV

Transcript Sequence

Transcript ID	Os05t0389800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:18872363:18875789:-1 gene:Os05g0389800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8). (Os05t0389800-01)
Sequence	ACGCACGGATAAAGCGGCCTTGGCCGCACCACCGACCGGCGACCACAAAGCCCAAGCCCG TAACCCCCTTCGATACCGCCTCTCGCGGCACCGCCGCGCCGCCGCCGCAAACGAGGCTAC GGAGGCCGAGGCCATGGCGGCGAGCGATGATGGCCAGCTCAGGACGTGGGTCTCCGACCG CCTCATGGCGCTCCTCGGATACTCCCAGGGCCTCGTGGCGCGGCTTGTCGTCCGCCTCGC GCGGGAGTGCGCCTCCGCGGGTGACCTCGCGGCGCGGCTCGTCGACCTCGCCGGGTTCCC GCCTTCCCCCGACACCGCCGCGTTCGCCGAGGACGTGTACGGGAGGGTGCCCCGCAGTTG CGGCGGCGGCGGCGACGACGCCGGGGTCAGCGAGTACCAGAGGCAGATGCAGGAGGCTGC GGCGATGGCCAAGAAGCAGAGCACCATCAAGCTGCTCGACGACGACGGCGAGATCGGCGT TTCCGCGTCGCCCTCCAGCGGCGGCAGGAAGCGTTTCAGGAGGAAGGCCGTGGGCGAAGA CGATGACGATGCCGGACGGAACGCGCGACGGCGGCGTAGCCCGGACGACGAGGAGGAGGA CGGCGACGCCGGCGAGGAAGAAGAGATGGAGCGGGATCAGATCGAGAGGGCGCAGCTCGA GCGGAACATCAGGGAGCGCGACGCGGCGAGCACGAGGAGGCTGACGGATCGGAAGACGAC CAAGCGGGAGCAGGGCGAGCTCGCGCGCCGGTCGGACGCCATGGACAAGAACGACACCTC GGGGCTCAGGAGGCTCTCCCGGCGCGCGTACCTGCAGAGGCGGAAGGAGAAGAAGGTCGA GGAGATGCGCGACGAGATCGTCGACCACGAGTTCCTCTTCCCCGGCGTCCAGCTGACGGC CGCCGAGGAGAGGGACATGAGGCACAAGAAGCAAGTCTACGGCCTCGTGCACGATCGCGA CGACTACTACAGAATGCCGGACGCCTACGACGCCGCCGCGAACGTCGATCAGGAGAAGAG GTTCTCGGTGGCGCGGCGGCGGTACGAGGAGCCAGCTGAGGCGGCGAGGGACGGCAAGAC GGCGAACGCCTTGTCCGAGCAGGAGGCCTGGGAGGAGCAGCAGATACGGAAGTCGAGGCT GCAGTTCGGATCCATGGATCGCGGCCGGCGCGGCGACGAGTACGAGCTCCTGTTCGACGA CGGCGTCGAGTTCGTCAGGTCGACGGTGATGGCGGGCACCGCGCCTGCAGACGACGACGA CACGGCGGCGGCGGCGGCGGCCGACGAGTACCATGCCGAGGCCATGGATGCCAAGGCCAC GTTGCAAGACGAGAGGAAGACTCTCCCGGTGTACAAGCTCAAGGACGACCTGCTCAAGGC CATCGACGAGCACAAGGTCCTGATCGTCGTCGGCGAGACCGGCTCCGGCAAGACGACGCA GATACCGCAGTACCTCCACGAGGTCGGGTACACGGCGGGGGGGAGGAAGAAGGTGGCGTG CACGCAGCCGCGGCGCGTGGCGGCGATGAGCGTGGCGGCGAGGGTGGCGGAGGAGATGGG CGTCAAGCTCGGGCACGAGGTCGGCTACTCCATCCGGTTCGAGGACTGCACGTCGGAGAA GACGGTGATCAAGTACATGACCGACGGGATGCTCCTCCGCGAGTTCCTCGGCGAGCCCGA CCTGGGCAGCTACAGCGTCGTCGTCGTCGACGAGGCCCACGAGCGGACGCTCGCCACCGA CATCCTCTTCGGCCTCGTCAAGGACATCGCCCGCCTCCGCCCTGACATGAAGCTGCTCAT CTCCAGCGCGACGCTCAACGCCGACAAGTTCAGCGACTTCTTCGACGCGGCGCCCGTCTT CCGGATCCCCGGGCGGCGGTTCGAGGTGGGCATCCACTACACCGTGGCGCCGGAGGCGGA CTACATCGACGCCGCCGTCGTGACGGTGCTGCAGCTGCACGTCACGGAGCCCCCCGGCGG CGGCGACATCCTGCTGTTCCTCACGGGGCAGGAGGAGATCGAGACGGTGGAGGAGATCCT GAGGCATCGGCTGCGGGTGCTCGGCGGCAAGGTGGCGGAGCTGGTGATCTGCCCCATCTA CGCCAACCTCCCCGCCGAGCTGCAGGCCAAGATCTTCGAGCCGGCGCCGGCGGGCGCGCG CAAGGTGGTGCTCGCCACCAACATCGCCGAGACGTCGCTGACCATCGACGGGATCAAGTA CGTGGTCGACCCGGGGTTCTGCAAGGTGAAGTCGTACAACCCGCGCACCGGGATGGAGTC GCTGTTGGTGGCGCCGGTGTCGAGGGCGTCGGCGGAGCAGCGCGCCGGCCGGTCGGGGCG CACCGGGCCGGGCGAGTGCTTCCGGCTCTACACGGAGTACAACTTCGTCAGCGACCTCGA CGACGACGCGGTGCCGGAGATCCAGCGGAGCAACCTCGCCAGCGTCGTGCTGGCGCTCAA GGCGCTCGGGATCAACGACCTCGTCGGCTTCGACTTCATGGACCCGCCGCCGGCGGAGTC GCTGCTCAGGGCGCTGGAGGAGCTCTTCGCCCTCGGCGCGCTCAACAGCCGCGGCGAGCT CACCAAGACCGGGAGGAGGATGGCGGAGTTCCCCCTGGACCCCATGCTCTCCAAGGCCAT CGTCGCGTCGGAGAGGTACGGGTGCTCCGAGGAGGTGATCACCATCGCGGCCATGCTGTC CGCCGGGAACGCCGTCTTCTACCGCCCAAGGGACAAGCGGGTCCACGCCGACGCCGCACG GCGGGCGTTCCACGCCGGCAACGCCGGCGACCACGTCGCGCTGCTCAACGTGTACAACGC GTGGGCGGAGTCCGGCTACTCGCCGCAGTGGTGCCGCGAGAGCTTCGTGCAGCACCGCAC CATGCGGCGCGCGCGGGACGTGCGGGACCAGCTGGGGGCGCTGCTTGAGCGGGTGGAGAT CGCGCCGTGCTCCTCCGCCGGCGGCGGCGACCTCGACGCGGTCAGGAAGGCGGTCACGGC GGGCTACTTCCGCCACGCTGCGCGGCTGCAGAGGGACGGGTCGTACCGCGCCGTGAAGAG CCGGCAGACGGTGTTCGTCCACCCGAGCTCCGGGGTGGCGCAGGCGCCGCCGCGGTGGGC GTTGTACCACGAGCTGGTGCTCACGACCAAGGAGTACATGAGGCAGGTGACGGAGCTCAA GCCGGAGTGGCTGGTGGAGATCGCGCCGCACTACTACGAGCGCAAGGACGTCGACGAGCC TGAGCCCAAGAAGACGGCGGCGGCGACTACGCCGCAAGAGCAGACGACGGCCGGCTCTAC ACCAACGAAGCAGACTCCGAATCTGAATAGTTTCTTCGACGTGTAAAGAGTGCCATTGGA ACTTGTAAATAGCTGTAATTATACCAAACTAACAAGTGAAAAGTTCAAGACAATTTGTTT GTTGCTC