Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0389600-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:18862715:18867283:1 gene:Os05g0389600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0389600-01)
Sequence	ATGGGATCTGGAAGCAGCAAGGCCGGCGCCTCGTCGGCGTCATCTTCGTCGTCGGCGTCG GCGTCGGCGTCGGCGTCCGGCGGCGACGAGGCGAGTAAGGGGAATGGGAAGGGGCAGCGG AGGGGGAGGGGGAGGGGGAGAGGCCTGCTGCAGCGGCTGCCGAGCTCCTCCTCCTCCTGC TTCCGCGGCCACGGCACGCCGTCGCGCGACGACGCTTCCTCGGCGTCTTCGCCACCGCCA CCGCCACGGCCGCCGCGGCGGCCGTTCGAGTCTAGCAAGGGAGAGGAGAATGGAAGCCTG CCTTCAATCGCTCAAATGGACAAATCAGAAGAGGATGCTCCCACAATCCCTAAATCTCAT CCAGGTGAAGGGGCAACATTGCCTTCATCACATATAAACAGGGATCAGGATGTTGATGTA TTGCAGAATGCCACTGCCGTCAACAACAGGGTGGAGGTCAACCAGTCACCAAATCATTCT GACAGTTCACGGCCACGTTTTGGTGTCAACTTCGGGTTGAGTAGAGCTGTCAGCTTGGGA TCATCGGTAGCCTGCTCCATTCTCTCATCGGACCTCTCCACTTCAGCTAATCCTGATGGA GGCCATGGAAATGTGGACAATTCTTCTGATGCAAACATCTCCCAGCAAGGTGGTGCATCA ACTGCTGGGATTGATTCGACTCTGGATATGCTTAGAGATAGTGTAACCGCACAAGCTAGA GCAGCCCATCAGGCTAGGAGAAATTTGCTAGAATCCGACAATGCTAACTTGAGATATTCC AACAGAAGGATGGGACCTCAGGAACCTTTTGAAGGCAGTGTTCGATTCAGCCGAACGTTG AGTGTTGGACGTCTTCGTGACAGAGTTCTTAGGAGGACTCCATTCTCAGATGGGTTATTC ACCCCTTCACTTCTTTACGATAGGGCAATATGGCCATCAGGAAATGCTAGTGCCAGGCAA AATTCAGCAATCATGCAAAGGACTAATTCAGAGAGAAATTCTGAACTGCAATTGGATTCT TCAACCGACTCTGCAACTCTAAGAGAGGCCAATAATCGGGATCTACTGGAGCGCAGATCA GCTTTTCTTGAGAGGAGGAGGATACGATCTCAGGTCCGAGCTCTCCAAAGATTGGGCAGC AGGTATGAAAATCTATCAGGACTATCAGGACATGAGAGATCATGCATACTATCTGGTCAG CATAGAACGGGAAATTGTAATTGCAGAACGAGCAGTCGACCAGGAAATTCTGATGAAGAA ACAAACACAAGAGCTAGCATATCAAGAATCGTTATGTTAGCAGAAGCACTTTTTGAGGTT CTGGATGAGATCCACCAACAGTCTGCTGCCTTATCCTCAAGGCCATCGTTTTCTTCAATT GGGTCCGTTCCTGCTCCAAAGGAGGTTGTCGAGCGTCTTCCTGTAAAAGTATACAGGAGA TCATTAAAACACCAAACTGAGGAGGCTGCACAATGCTACATTTGCCTTGTTGAATATGCC GAGGGAGACTGTGTCCGTATTCTTCCATGCAATCATGAATTTCATCTAACATGCGTAGAT AAATGGTTGAAAGAGATACACAGGGTTTGTCCACTTTGTCGTGGTGATGTCTGCAGATCC AATGCATCAGGCATTGGAAAAACCACATGA

Peptide Sequence

PEP ID	Os05t0389600-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:18862715:18867283:1 gene:Os05g0389600 transcript:Os05t0389600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0389600-01)
Sequence	MGSGSSKAGASSASSSSSASASASASGGDEASKGNGKGQRRGRGRGRGLLQRLPSSSSSC FRGHGTPSRDDASSASSPPPPPRPPRRPFESSKGEENGSLPSIAQMDKSEEDAPTIPKSH PGEGATLPSSHINRDQDVDVLQNATAVNNRVEVNQSPNHSDSSRPRFGVNFGLSRAVSLG SSVACSILSSDLSTSANPDGGHGNVDNSSDANISQQGGASTAGIDSTLDMLRDSVTAQAR AAHQARRNLLESDNANLRYSNRRMGPQEPFEGSVRFSRTLSVGRLRDRVLRRTPFSDGLF TPSLLYDRAIWPSGNASARQNSAIMQRTNSERNSELQLDSSTDSATLREANNRDLLERRS AFLERRRIRSQVRALQRLGSRYENLSGLSGHERSCILSGQHRTGNCNCRTSSRPGNSDEE TNTRASISRIVMLAEALFEVLDEIHQQSAALSSRPSFSSIGSVPAPKEVVERLPVKVYRR SLKHQTEEAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHRVCPLCRGDVCRS NASGIGKTT

Transcript Sequence

Transcript ID	Os05t0389600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:18862715:18867283:1 gene:Os05g0389600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0389600-01)
Sequence	AGCAGCAGGAGCGAGGCGGAGCGGAGCTACTCCTACTAGCTTCCCTTTCGCGGCCATCCA TGCGCGCACGCGCGAGCGAGGCGTGAAATCCGAGCAATGCCGATGGTGATGGCGCGCGGC CTGCCCCGATCCGCTCATCTGTAGTAGAGGTGGGAGTGGGGTTGGTGGTGGTGGTGGTGT GGTGGCGCGAGATGGGATCTGGAAGCAGCAAGGCCGGCGCCTCGTCGGCGTCATCTTCGT CGTCGGCGTCGGCGTCGGCGTCGGCGTCCGGCGGCGACGAGGCGAGTAAGGGGAATGGGA AGGGGCAGCGGAGGGGGAGGGGGAGGGGGAGAGGCCTGCTGCAGCGGCTGCCGAGCTCCT CCTCCTCCTGCTTCCGCGGCCACGGCACGCCGTCGCGCGACGACGCTTCCTCGGCGTCTT CGCCACCGCCACCGCCACGGCCGCCGCGGCGGCCGTTCGAGTCTAGCAAGGGAGAGGAGA ATGGAAGCCTGCCTTCAATCGCTCAAATGGACAAATCAGAAGAGGATGCTCCCACAATCC CTAAATCTCATCCAGGTGAAGGGGCAACATTGCCTTCATCACATATAAACAGGGATCAGG ATGTTGATGTATTGCAGAATGCCACTGCCGTCAACAACAGGGTGGAGGTCAACCAGTCAC CAAATCATTCTGACAGTTCACGGCCACGTTTTGGTGTCAACTTCGGGTTGAGTAGAGCTG TCAGCTTGGGATCATCGGTAGCCTGCTCCATTCTCTCATCGGACCTCTCCACTTCAGCTA ATCCTGATGGAGGCCATGGAAATGTGGACAATTCTTCTGATGCAAACATCTCCCAGCAAG GTGGTGCATCAACTGCTGGGATTGATTCGACTCTGGATATGCTTAGAGATAGTGTAACCG CACAAGCTAGAGCAGCCCATCAGGCTAGGAGAAATTTGCTAGAATCCGACAATGCTAACT TGAGATATTCCAACAGAAGGATGGGACCTCAGGAACCTTTTGAAGGCAGTGTTCGATTCA GCCGAACGTTGAGTGTTGGACGTCTTCGTGACAGAGTTCTTAGGAGGACTCCATTCTCAG ATGGGTTATTCACCCCTTCACTTCTTTACGATAGGGCAATATGGCCATCAGGAAATGCTA GTGCCAGGCAAAATTCAGCAATCATGCAAAGGACTAATTCAGAGAGAAATTCTGAACTGC AATTGGATTCTTCAACCGACTCTGCAACTCTAAGAGAGGCCAATAATCGGGATCTACTGG AGCGCAGATCAGCTTTTCTTGAGAGGAGGAGGATACGATCTCAGGTCCGAGCTCTCCAAA GATTGGGCAGCAGGTATGAAAATCTATCAGGACTATCAGGACATGAGAGATCATGCATAC TATCTGGTCAGCATAGAACGGGAAATTGTAATTGCAGAACGAGCAGTCGACCAGGAAATT CTGATGAAGAAACAAACACAAGAGCTAGCATATCAAGAATCGTTATGTTAGCAGAAGCAC TTTTTGAGGTTCTGGATGAGATCCACCAACAGTCTGCTGCCTTATCCTCAAGGCCATCGT TTTCTTCAATTGGGTCCGTTCCTGCTCCAAAGGAGGTTGTCGAGCGTCTTCCTGTAAAAG TATACAGGAGATCATTAAAACACCAAACTGAGGAGGCTGCACAATGCTACATTTGCCTTG TTGAATATGCCGAGGGAGACTGTGTCCGTATTCTTCCATGCAATCATGAATTTCATCTAA CATGCGTAGATAAATGGTTGAAAGAGATACACAGGGTTTGTCCACTTTGTCGTGGTGATG TCTGCAGATCCAATGCATCAGGCATTGGAAAAACCACATGATCTTCTCTTCTGTGAGAAA AATGGAGCTTCTGACATTGTTTCTGATCCAATCCCAACAGAATTTGTAATACACGTGTTT CAGGTGTAATTTCACATATTCTTTCCCTCCTTCGATCAGGACAACTCAGAGTGCTCCTTC ATGTGGTGGCAAATTTGCATCGCAGTCATCCCTGTTATAAAATCGATGAACTGCCATGTG AATTTGGAATTCTTGTATGGCAAGGGAAGTTTGTTGATATTAGGATTTCATTATACGTTT TCTTTGAGTGTTGTTTGAACTTGTTGAGACGATGACTGTCTTTTTAGATGCATCAGCCAA CGACAACTTTCAAAATTGTGTTGTCATGCTGAAGCAATCAATAGATTTTTCATGCTATAT GGGTTTGATGAGGC