Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0389500-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:18845942:18849913:-1 gene:Os05g0389500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-01);Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-02);Similar to Hydrolase. (Os05t0389500-03)
Sequence

ATGCTAAAGCTCCAAGCTTCCCTCCCTCTCTTCCGCCTCCGTCCCCGCCCCAGCTCCCCT
CCTCCCTGCGGCCCCCGTCTCCCCTTCGTCCCAATTTGCAAGCGGCGGATGAGCACCCAG
GCGCAGCCCAGTTTCGCCCCTCTCCCCACGGCGCAATCCGAATCCGATGCAGGGGCAGCT
GGGTACCAGTTCCGGCTGGTTTCCTACAACATCTTGGCCCAGGTTTATGTGAAGAGTGCG
TTTTTCCCGCATTCTCCATCTGCCTGTCTCAAGTGGAAAACTCGGTCTAAAGCTGTTCTA
TCAGAACTCAAGAGCTTCGAAGCTGACCTCATGTGCATACAGGAGTTGGATGAGTATGAT
ACCTTCTACAAGAAAAACATGGAGAATTCTGGATATTCAAGTATTTACATTCAACGATCT
GGGGACAAACGGGATGGATGTGGCATATTCTATAAACCAAAAAGCATGGAACTGGTCCAG
AAGGAAGTACTACATTACAATGATTTAGTGGAAAAATATGTTCATACTGATCATGTAAAT
AGTGATACATCAAATAATTCTTCACCAACAGAAGAAGCAAGCAAGAAGGTGGATAATAAC
AAGCATGGAGATCCAAATGATCCACGTTTCAGATTGAAACGTGACTGTGTTGGTTTACTT
GCCGCTTTCAAGCTTAATGATCCTTGTGATCATATTTTAATTATGGCGAACACACATATT
TATTGGGATCCTGAATGGATTGATGTAAAATTGGCTCAAGCAAAGTATATTCTTTCAAGA
GTTACTCAGTTTGAGAAACTTATCTCGAATAAATTTAACTGTAAACCTTCAGTCATGATT
GCTGGTGACTTCAACTCAACTCCTGGTGACAAGGTATACAACTACCTCGTATCAGCCAAC
TCCGATTCTACGGACGAAGCTCCGATCAAATTACGCAGCCTTTATGCTGCGAATGGAGGG
GAGCCAGAGTTCACCAACTGCACTCCTGGTTTTACAGGAACACTGGACTACATATTCTTG
TCGGACGGCAGTTCAGTAAAACCTACCAGTCTACTTCGTATACCACGAGGGGATTCTGCC
GAAGTCCAAGGAGGGCTACCCAACTTTCACCATCCTAGCGATCATTTGCCAATCGGTGCC
GATTTTCAGGTACTCGGCAGCGAAGGCTGA

Peptide Sequence

PEP ID

Os05t0389500-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:18845942:18849913:-1 gene:Os05g0389500 transcript:Os05t0389500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-01);Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-02);Similar to Hydrolase. (Os05t0389500-03)
Sequence

MLKLQASLPLFRLRPRPSSPPPCGPRLPFVPICKRRMSTQAQPSFAPLPTAQSESDAGAA
GYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD
TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVN
SDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHI
YWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSAN
SDSTDEAPIKLRSLYAANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSA
EVQGGLPNFHHPSDHLPIGADFQVLGSEG

Transcript Sequence

Transcript ID

Os05t0389500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:18845942:18849913:-1 gene:Os05g0389500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-01);Endonuclease/exonuclease/phosphatase domain containing protein. (Os05t0389500-02);Similar to Hydrolase. (Os05t0389500-03)
Sequence

AAAACGCTTGAGCGGTGGAGCCACAGCCGTACAGCCGTCGGCGGCGGCGGCGGCGGCGCG
ACCATCTCCTCGCGGCCAGATGCGCGTGTTCCGGCGCCGGAGAGCCCAACGAATCCGCCG
ATGCTAAAGCTCCAAGCTTCCCTCCCTCTCTTCCGCCTCCGTCCCCGCCCCAGCTCCCCT
CCTCCCTGCGGCCCCCGTCTCCCCTTCGTCCCAATTTGCAAGCGGCGGATGAGCACCCAG
GCGCAGCCCAGTTTCGCCCCTCTCCCCACGGCGCAATCCGAATCCGATGCAGGGGCAGCT
GGGTACCAGTTCCGGCTGGTTTCCTACAACATCTTGGCCCAGGTTTATGTGAAGAGTGCG
TTTTTCCCGCATTCTCCATCTGCCTGTCTCAAGTGGAAAACTCGGTCTAAAGCTGTTCTA
TCAGAACTCAAGAGCTTCGAAGCTGACCTCATGTGCATACAGGAGTTGGATGAGTATGAT
ACCTTCTACAAGAAAAACATGGAGAATTCTGGATATTCAAGTATTTACATTCAACGATCT
GGGGACAAACGGGATGGATGTGGCATATTCTATAAACCAAAAAGCATGGAACTGGTCCAG
AAGGAAGTACTACATTACAATGATTTAGTGGAAAAATATGTTCATACTGATCATGTAAAT
AGTGATACATCAAATAATTCTTCACCAACAGAAGAAGCAAGCAAGAAGGTGGATAATAAC
AAGCATGGAGATCCAAATGATCCACGTTTCAGATTGAAACGTGACTGTGTTGGTTTACTT
GCCGCTTTCAAGCTTAATGATCCTTGTGATCATATTTTAATTATGGCGAACACACATATT
TATTGGGATCCTGAATGGATTGATGTAAAATTGGCTCAAGCAAAGTATATTCTTTCAAGA
GTTACTCAGTTTGAGAAACTTATCTCGAATAAATTTAACTGTAAACCTTCAGTCATGATT
GCTGGTGACTTCAACTCAACTCCTGGTGACAAGGTATACAACTACCTCGTATCAGCCAAC
TCCGATTCTACGGACGAAGCTCCGATCAAATTACGCAGCCTTTATGCTGCGAATGGAGGG
GAGCCAGAGTTCACCAACTGCACTCCTGGTTTTACAGGAACACTGGACTACATATTCTTG
TCGGACGGCAGTTCAGTAAAACCTACCAGTCTACTTCGTATACCACGAGGGGATTCTGCC
GAAGTCCAAGGAGGGCTACCCAACTTTCACCATCCTAGCGATCATTTGCCAATCGGTGCC
GATTTTCAGGTACTCGGCAGCGAAGGCTGATTGCATTTTGCACGGCAGCAACAAATGTCC
CCTGGGATCGTTCCCCGTGATTTGTTTGGATTTATTGTAGAAACAGTAGCAAATTTATTA
ATATCAACCAGAATTTTTGTTACATGGTCTACACATTGGAGGGTATTTGTTATTATTATC
TTTAAAGTTTCACTACCAGGATTTCATAGGACTAAAGTTTGTAGCTAGACCTTAAGTTCC
TTATGGAGTTATGGTAGTGAAGGGCTCAGATAGCAGACC