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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0367400-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:17644847:17649658:-1 gene:Os05g0367400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPK3 description:Thiamin pyrophosphokinase, eukaryotic domain containing protein. (Os05t0367400-01)
Sequence

ATGGCCCCGAGGCCGGCCATGTCCCACTCCTCCGCCTTCCTGCTGCCCTCGCCGTCCGCG
GCGGCGGCGGGCGCCGACGCCGACGGCGCCGCCTACGCGCTCCTCGTCCTCAACCAGCGC
CTGCCCCGCTTCGCGCCCCGCCTCTGGGACCGCGCGCAGGTGCGGGTGTGCGCGGACGGC
GGCGCCAACCGGGTGTTCGACGGCATGCCGGAGCTGTTTCCTGGACAGGACCCCGACGAG
GTTCGCCGCAGATACAAACCAGATGTAATCAAAGGAGATCTGGACTCAGTTCGACCAGAA
GTGAAGGAATATTATTCCAATATGGGTACTCAAATAGTCGATGAGTCACATGATCAGGAC
ACCACCGATTTACACAAATGTGTAGCTTTTATCACTGAGAATTCGGCCATCCCCAACAAA
TCTAATCTGTGTATCTTTGCTCTTGGGGCCCTTGGGGGAAGGTTTGACCACGAGATGGGA
AACATCAACGTACTTCATCTCTTCCCAAACAACAGGATCATACTCCTATCGGATGATTGC
TTGATCTTTCTGCTGCCAAGAACACACACTCATAACATCCATATTGAACGGTCTATTGAG
GGGCCCCACTGTGGATTGATTCCCATCGGCGCGCCTTCGGCCACCACCACAACCACTGGG
CTTCAATGGAATTTAGATAATACCAGCATGAGCTTTGGTGGACTTATTAGCACATCAAAC
ATTGTGAGAGAGGAGAGTACTGTTGTTACGATCACTTCAGATTCTGACCTGATTTGGACA
ATATCGCTCCGGCACCACTCTTGA

Peptide Sequence

PEP ID

Os05t0367400-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:17644847:17649658:-1 gene:Os05g0367400 transcript:Os05t0367400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPK3 description:Thiamin pyrophosphokinase, eukaryotic domain containing protein. (Os05t0367400-01)
Sequence

MAPRPAMSHSSAFLLPSPSAAAAGADADGAAYALLVLNQRLPRFAPRLWDRAQVRVCADG
GANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLDSVRPEVKEYYSNMGTQIVDESHDQD
TTDLHKCVAFITENSAIPNKSNLCIFALGALGGRFDHEMGNINVLHLFPNNRIILLSDDC
LIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSATTTTTGLQWNLDNTSMSFGGLISTSN
IVREESTVVTITSDSDLIWTISLRHHS

Transcript Sequence

Transcript ID

Os05t0367400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:17644847:17649658:-1 gene:Os05g0367400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPK3 description:Thiamin pyrophosphokinase, eukaryotic domain containing protein. (Os05t0367400-01)
Sequence

AACACGCCAGCTCGCACGACCGCGACGAGCCCACGACTCGCAAGTCGCACCCTCCCCGAC
CCCGATCGGCGCGAAGCCACCCACTTCCAGCCCTCGCCGTCGCCGCGCCGCCGCCGCCGC
CGCCATGGCCCCGAGGCCGGCCATGTCCCACTCCTCCGCCTTCCTGCTGCCCTCGCCGTC
CGCGGCGGCGGCGGGCGCCGACGCCGACGGCGCCGCCTACGCGCTCCTCGTCCTCAACCA
GCGCCTGCCCCGCTTCGCGCCCCGCCTCTGGGACCGCGCGCAGGTGCGGGTGTGCGCGGA
CGGCGGCGCCAACCGGGTGTTCGACGGCATGCCGGAGCTGTTTCCTGGACAGGACCCCGA
CGAGGTTCGCCGCAGATACAAACCAGATGTAATCAAAGGAGATCTGGACTCAGTTCGACC
AGAAGTGAAGGAATATTATTCCAATATGGGTACTCAAATAGTCGATGAGTCACATGATCA
GGACACCACCGATTTACACAAATGTGTAGCTTTTATCACTGAGAATTCGGCCATCCCCAA
CAAATCTAATCTGTGTATCTTTGCTCTTGGGGCCCTTGGGGGAAGGTTTGACCACGAGAT
GGGAAACATCAACGTACTTCATCTCTTCCCAAACAACAGGATCATACTCCTATCGGATGA
TTGCTTGATCTTTCTGCTGCCAAGAACACACACTCATAACATCCATATTGAACGGTCTAT
TGAGGGGCCCCACTGTGGATTGATTCCCATCGGCGCGCCTTCGGCCACCACCACAACCAC
TGGGCTTCAATGGAATTTAGATAATACCAGCATGAGCTTTGGTGGACTTATTAGCACATC
AAACATTGTGAGAGAGGAGAGTACTGTTGTTACGATCACTTCAGATTCTGACCTGATTTG
GACAATATCGCTCCGGCACCACTCTTGAAATACGTAACACAATTGTATCATAGTTCCAAT
TTTGTCTCATCTATTTTACGTCGTTGAGTTCTACCCTTAGTAGAAGAGTGAAAACATACA
TGGCATCTGATGTGGCTAAACCTGGTGAAATGTTAATATGTAACTTAGAGGACTTGGCAC
GTCTCTAAATATATACCTTGCACTGTAATTGCACAATTTTTTTTTTTTGTAAACATGTCA
CCAAATTACCTGTAATGTAAAGAACCAGTTGTATTTGTTAAGCAAACTCCATATTTTCGC
TT