Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0353300-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:16686998:16690968:1 gene:Os05g0353300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os05t0353300-00)
Sequence

ATGGCCCTCTCCTCCCGCGCCGCCGCCTTCCCCCACATCTCCCTCCCCTCCCCTCGCCCC
CGCGTCTCCCTCCGCCCGCCACCCCCGGCCCCGCGCTCCCTGCGCCTCGACCGCGTCGTC
GCCGACACCACCGCCGAGCTGGGCCTCGATGGCGGCGGCGGCGGCGGGCTGCTCGCCGCC
GCCATCGAGCACCTCGAGCGGGAGCCGGCGTTCGCGGGGGAAGGGGAGGACGCCGCGGCG
GCGGCGTCGGCGCAGCTCGCGGCGCTGTCCCCGCGGGAGCTGCAGCTGGTGCTCGTCTAC
TTCGCGCAGGAGGGCCGCGACGCCTACTGCGCGCTCGAGGTGTTCGACTGGCTCCGCCGC
GCCAACCGCGTCGACGGGGAGACCATGGAGCTCATGGCCGCCATCGCCTGCGGGTGGATC
GAGCGCCTCGTGGGCGGCGGCGGGGACGTCGCCGACGTCGCCGCGCTGCTCGGGGAGATG
GACTGCGTCGGGCTCCGCCCCGGGTTCAGCCTCGTCGAGAAGGCCGTCGCGCTCTACTGG
GACCGCGGCGACAGGGGCAGCGCCGTCGACTTCGTCAGGGACGTCCTCAGGAGAGGGGGC
GTCGGCGTCGGCGTCGGCGACGGAGGGGAGTATGGCGGTGCTAGCGACGGCGAGCGCGGA
GGGCCCGTCGGATACCTCGCGTGGAGGATGATGATGGATGGGGATTACCGGGATGCTGTT
AAATTGATCATTGAATTTAAGGAGAGTGGCTTGCAACCTGAAGTGTATAGTTATCTTATT
GGGTTGACTGCCTTGGTTAAAGAACAAAAGGAATTCTCAAAGGCATTGCGGAAATTGAAT
TCATCGGTGAAGGTGGGCTCGATTTCCAAACTTGACTCTGAGACTATGCATAGTATTGAA
AATTACCAATCTGAATTATTAAGTGATGGTGTTCTTTTATCAAAATGGGCAATTGAGGAA
GGCAGCAGTGATGTCCTAGGACTTGTGCACGAGAGGCTCCTTTCATTGTACACTTGCGCT
GGTTGTGGCTTAGAAGCTGAGCACCAACTTTGGGAAATGAAGCTTCTTGGTAGGGAACCT
GACACACAGCTCTATGATGTTGTTTTGGCCATCTGCGCTTCTCAGGGAGAAGTTGCTGCC
GTCCGTCGATTGCTCGCTGGAGTCGAGTCAACCAGTGCTGGAAGAAGGAAGAAGTCTCTG
TCATGGCTTCTACGAGGCTATGTCAAAGGCGGCTTTTATCTGGAGGCCTCGGAAACACTC
ATGAAGATGCTTGACATGGGCTTGTATCCAGAGTACCTAGACAGAGCAGCTGTGCTGACC
GCCCTGCGGAGAAACATACAGGAATCTGGCAGCCTGGAGTCCTACATGAAACTCTGCAAG
CGACTCTCCGAAACTGATCTGATTGGACCGTGCGTCATATATCTATACGTGCGCAAGTTC
AAACTATGGATGATGCACATGCTGTGA

Peptide Sequence

PEP ID

Os05t0353300-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:16686998:16690968:1 gene:Os05g0353300 transcript:Os05t0353300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os05t0353300-00)
Sequence

MALSSRAAAFPHISLPSPRPRVSLRPPPPAPRSLRLDRVVADTTAELGLDGGGGGGLLAA
AIEHLEREPAFAGEGEDAAAAASAQLAALSPRELQLVLVYFAQEGRDAYCALEVFDWLRR
ANRVDGETMELMAAIACGWIERLVGGGGDVADVAALLGEMDCVGLRPGFSLVEKAVALYW
DRGDRGSAVDFVRDVLRRGGVGVGVGDGGEYGGASDGERGGPVGYLAWRMMMDGDYRDAV
KLIIEFKESGLQPEVYSYLIGLTALVKEQKEFSKALRKLNSSVKVGSISKLDSETMHSIE
NYQSELLSDGVLLSKWAIEEGSSDVLGLVHERLLSLYTCAGCGLEAEHQLWEMKLLGREP
DTQLYDVVLAICASQGEVAAVRRLLAGVESTSAGRRKKSLSWLLRGYVKGGFYLEASETL
MKMLDMGLYPEYLDRAAVLTALRRNIQESGSLESYMKLCKRLSETDLIGPCVIYLYVRKF
KLWMMHML

Transcript Sequence

Transcript ID

Os05t0353300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:16686998:16690968:1 gene:Os05g0353300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os05t0353300-00)
Sequence

CCTCCCAGTCCCATCCCTAGCTCGCTCCACCCCAATCCCCCACCCCCACCATGGCCCTCT
CCTCCCGCGCCGCCGCCTTCCCCCACATCTCCCTCCCCTCCCCTCGCCCCCGCGTCTCCC
TCCGCCCGCCACCCCCGGCCCCGCGCTCCCTGCGCCTCGACCGCGTCGTCGCCGACACCA
CCGCCGAGCTGGGCCTCGATGGCGGCGGCGGCGGCGGGCTGCTCGCCGCCGCCATCGAGC
ACCTCGAGCGGGAGCCGGCGTTCGCGGGGGAAGGGGAGGACGCCGCGGCGGCGGCGTCGG
CGCAGCTCGCGGCGCTGTCCCCGCGGGAGCTGCAGCTGGTGCTCGTCTACTTCGCGCAGG
AGGGCCGCGACGCCTACTGCGCGCTCGAGGTGTTCGACTGGCTCCGCCGCGCCAACCGCG
TCGACGGGGAGACCATGGAGCTCATGGCCGCCATCGCCTGCGGGTGGATCGAGCGCCTCG
TGGGCGGCGGCGGGGACGTCGCCGACGTCGCCGCGCTGCTCGGGGAGATGGACTGCGTCG
GGCTCCGCCCCGGGTTCAGCCTCGTCGAGAAGGCCGTCGCGCTCTACTGGGACCGCGGCG
ACAGGGGCAGCGCCGTCGACTTCGTCAGGGACGTCCTCAGGAGAGGGGGCGTCGGCGTCG
GCGTCGGCGACGGAGGGGAGTATGGCGGTGCTAGCGACGGCGAGCGCGGAGGGCCCGTCG
GATACCTCGCGTGGAGGATGATGATGGATGGGGATTACCGGGATGCTGTTAAATTGATCA
TTGAATTTAAGGAGAGTGGCTTGCAACCTGAAGTGTATAGTTATCTTATTGGGTTGACTG
CCTTGGTTAAAGAACAAAAGGAATTCTCAAAGGCATTGCGGAAATTGAATTCATCGGTGA
AGGTGGGCTCGATTTCCAAACTTGACTCTGAGACTATGCATAGTATTGAAAATTACCAAT
CTGAATTATTAAGTGATGGTGTTCTTTTATCAAAATGGGCAATTGAGGAAGGCAGCAGTG
ATGTCCTAGGACTTGTGCACGAGAGGCTCCTTTCATTGTACACTTGCGCTGGTTGTGGCT
TAGAAGCTGAGCACCAACTTTGGGAAATGAAGCTTCTTGGTAGGGAACCTGACACACAGC
TCTATGATGTTGTTTTGGCCATCTGCGCTTCTCAGGGAGAAGTTGCTGCCGTCCGTCGAT
TGCTCGCTGGAGTCGAGTCAACCAGTGCTGGAAGAAGGAAGAAGTCTCTGTCATGGCTTC
TACGAGGCTATGTCAAAGGCGGCTTTTATCTGGAGGCCTCGGAAACACTCATGAAGATGC
TTGACATGGGCTTGTATCCAGAGTACCTAGACAGAGCAGCTGTGCTGACCGCCCTGCGGA
GAAACATACAGGAATCTGGCAGCCTGGAGTCCTACATGAAACTCTGCAAGCGACTCTCCG
AAACTGATCTGATTGGACCGTGCGTCATATATCTATACGTGCGCAAGTTCAAACTATGGA
TGATGCACATGCTGTGAGCCTATCTGGCTCTGAAGTTACTTATGCTCATGTGAAGCTGGA
GCTTCAAATGCTTTTGAGGGCTCTGGTGAAGGAGACGCTAGAAGACTCTGACTGGGAGGG
TGAAGCAGCTGGTACATATTTACGGTTCCTTGTATATTTTTGGCTGAAAAGGAGCTCGAT
TCGAGTTGTTCATCCTCGTCGGAGCTATTTGTTGGACGAGACTACGAGAGTACATACAGA
ATTTGTAAATCTTCAGTGCTGCCATCACCGGTTGGTGGTGAAACGAGGACAATAGTTGGT
GTAGGGTATCGTA