Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0349700-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:16512069:16517776:1 gene:Os05g0349700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YELLOW GREEN LEAF 1 description:Chl synthase, Chl biosynthesis (Os05t0349700-01);Similar to Chlorophyll synthase. (Os05t0349700-02);Similar to Chlorophyll synthase. (Os05t0349700-03)
Sequence	ATGGCCACCTCCCACCTCCTCGCCGCCGCCTCCTCCACCGCCGCCTCCTCCGCCACCTTC CGCCCTCCCCTCCTCAGCCTCCGCTCCCCGCCGCCCTCTTCTCTCCGCCTCAACCGCAGG CGCCACTTCCAGGTGGTCCGCGCGGCCGAGACCGACAAAGAGACGAAGGCCAATGCGCCC GAGAAAGCTCCCGCGGGAGGCTCCAGCTTCAACCAGCTGCTCGGCATCAAGGGCGCCAAG CAAGAGAACGACATATGGAAGATTCGCCTTCAACTTACTAAGCCAGTGACATGGCCTCCG CTTGTATGGGGAGTGCTTTGTGGAGCAGCTGCCTCTGGAAATTTCCACTGGACAGTTGAA GATGTTGCAAAATCTATTGTCTGCATGATAATGTCTGGTCCATGTCTTACAGGATACACA CAGACAATTAACGACTGGTATGATCGAGATATAGATGCGATAAATGAACCTTACCGTCCT ATTCCTTCAGGCGCTATATCAGAAAATGAGGTCATTACTCAAATTTGGGCACTGTTGTTA GCAGGGCTTGGCCTGGGTGCTCTGTTAGATGTATGGGCAGGACATGATTTTCCTATTATT TTTTATCTTGCTGTTGGTGGGTCCTTGCTTTCTTACATATATTCAGCTCCACCTCTGAAG CTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGAGCTACATTGGCTTGCCC TGGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCT TTGTATAGCATAGCTGGGCTAGGGATTGCTATTGTAAATGACTTTAAGAGTGTTGAGGGA GATAGAGCTCTGGGGCTTCAGTCACTCCCGGTTGCTTTTGGTATGGAAACTGCAAAGTGG ATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAGGCTACCTTTTCAGTTCC GGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGGCAAGCGCGCAA CCGTTCTTCGTCTTGGGCCTTCTGGTGACCGCCCTTGCAACCAGCCACTGA

Peptide Sequence

PEP ID	Os05t0349700-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:16512069:16517776:1 gene:Os05g0349700 transcript:Os05t0349700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YELLOW GREEN LEAF 1 description:Chl synthase, Chl biosynthesis (Os05t0349700-01);Similar to Chlorophyll synthase. (Os05t0349700-02);Similar to Chlorophyll synthase. (Os05t0349700-03)
Sequence	MATSHLLAAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAP EKAPAGGSSFNQLLGIKGAKQENDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVE DVAKSIVCMIMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWALLL AGLGLGALLDVWAGHDFPIIFYLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIGLP WWAGQALFGTLTPDIVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKW ICVGAIDITQLSVAGYLFSSGKPYYALALLGLTIPQVVFQFQYFLKDPVKYDVKYQASAQ PFFVLGLLVTALATSH

Transcript Sequence

Transcript ID	Os05t0349700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:16512069:16517776:1 gene:Os05g0349700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YELLOW GREEN LEAF 1 description:Chl synthase, Chl biosynthesis (Os05t0349700-01);Similar to Chlorophyll synthase. (Os05t0349700-02);Similar to Chlorophyll synthase. (Os05t0349700-03)
Sequence	GGGTCAAAAACATCGCGTTATCCTTCCCTCCTCTCGCCTCGGTGGTGTGCGTCTTCCCCA CCCACCCCCAGTCTCCAATGGCCACCTCCCACCTCCTCGCCGCCGCCTCCTCCACCGCCG CCTCCTCCGCCACCTTCCGCCCTCCCCTCCTCAGCCTCCGCTCCCCGCCGCCCTCTTCTC TCCGCCTCAACCGCAGGCGCCACTTCCAGGTGGTCCGCGCGGCCGAGACCGACAAAGAGA CGAAGGCCAATGCGCCCGAGAAAGCTCCCGCGGGAGGCTCCAGCTTCAACCAGCTGCTCG GCATCAAGGGCGCCAAGCAAGAGAACGACATATGGAAGATTCGCCTTCAACTTACTAAGC CAGTGACATGGCCTCCGCTTGTATGGGGAGTGCTTTGTGGAGCAGCTGCCTCTGGAAATT TCCACTGGACAGTTGAAGATGTTGCAAAATCTATTGTCTGCATGATAATGTCTGGTCCAT GTCTTACAGGATACACACAGACAATTAACGACTGGTATGATCGAGATATAGATGCGATAA ATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGGTCATTACTCAAA TTTGGGCACTGTTGTTAGCAGGGCTTGGCCTGGGTGCTCTGTTAGATGTATGGGCAGGAC ATGATTTTCCTATTATTTTTTATCTTGCTGTTGGTGGGTCCTTGCTTTCTTACATATATT CAGCTCCACCTCTGAAGCTCAAGCAGAATGGATGGATTGGAAACTTTGCTCTTGGTGCGA GCTACATTGGCTTGCCCTGGTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATA TTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGCTAGGGATTGCTATTGTAAATGACT TTAAGAGTGTTGAGGGAGATAGAGCTCTGGGGCTTCAGTCACTCCCGGTTGCTTTTGGTA TGGAAACTGCAAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAG GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTC CTCAGGTGGTCTTTCAGTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAAT ACCAGGCAAGCGCGCAACCGTTCTTCGTCTTGGGCCTTCTGGTGACCGCCCTTGCAACCA GCCACTGATGAAAGCAGCAATCGCCCTGGACTGTGATTCTGTGACAGCGAAGTTTTGGGT GGAAGATGCAGATTGATGGTTCTCTGCAACTGTTGGTGGAGCTAGGTTCAGCAGCTATGT TCGCGAGTGTATTAGCGCTCTTTTGGCGGTGCTGGGTAGTAGAATGTAGAATCGTTTCTT GTTGATTCCCTGAACTGATCCAGATCAAACATCTTCTAAAGGTTCTGCGATGCAATGCTA GCTGCAGACGGGAGATGGTACAGGGGGTCGTTTTGCTACTTTGCCGCCGATGTTGTAGGG TGTGTAGACAGACTGTAGATGAATAATGTCAGTAACACCTGTGGGGGGTTCAGTGCTAGT GGGCTGCAAAACTTGAGCACTGCTTCGATCAAATTGTGTCTTTGATTATGAAATTATGGA ATCCAGCACAGGCAGGTAATAATTTCGTAATAGAGCATAAACAATTTGTG