Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0346400-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:16306509:16310464:1 gene:Os05g0346400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0346400-01)
Sequence

ATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAG
ATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAA
TGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAA
TATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAG
ACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCT
GTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATC
GAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGA
TCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTA
GTCAGAGATGGTATCCCCATAGACAAGTTCTGA

Peptide Sequence

PEP ID

Os05t0346400-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:16306509:16310464:1 gene:Os05g0346400 transcript:Os05t0346400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0346400-01)
Sequence

MDQVLNKVGSYWFSKRASKEIDSIGDDISSISTSIGTGAKWMVNKIKGKMQKALPDLLKE
YDMPAGLFPRDATNYEFNEETKKLTVYIPSACDVGYKDSSVLRFFTCVTGYLEKGKLSDI
EGLKTKVLVWTKVTAIKTEGSKVHFTAGVKKTRSRDAYEVVRDGIPIDKF

Transcript Sequence

Transcript ID

Os05t0346400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:16306509:16310464:1 gene:Os05g0346400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF538 family protein. (Os05t0346400-01)
Sequence

AGCGGCTGCTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGG
CGGATTGGGGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAA
GGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGA
CATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAA
AGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCT
CTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTA
CATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTG
TGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGT
GCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGC
TGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCAT
AGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCT
TCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTG
CCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTA
TTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTT
TGGCACCACTTCAAGTCTC