Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0339000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:15873838:15880419:-1 gene:Os05g0339000 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0339000-01)
Sequence	ATGGCGGCGGCGGCGGTGCGGGTAGACAAGGCCACGAGCGAGCTGCTGCTCGGCCCCGAC TGGACCCTCAACATCGACATCTGCGACGCCGTCAACTCCGATCACGGGCAAGCAAAAGAG GTGATTAAAGCTTTGAAGAAGCGTCTCCAGCACAAAAATTCAAAGGTTCAGTTTTTTGCT TTGACGCTATTGGAAACTCTAATGAAGAATTGTGGGGATCATGTGCATTCACAAGTTGTA GAGCGTGATATACTGCAGGAGATGATCAAAATTGTTAAGAAGAAGACTGATATGCAGTTG AGGGACAAAATTCTAGTACTCCTTGAATCTTGGCAAGAAGCATTTGGTGGGAATGGTGGG AAGCATCCCCAGTACTACTGGGCATATGCTGAAATGAAGAAATTGGGCTTGGAATTTCCT CGGCGATCACCTGATGCTGCACCAATACTTACTCCTCCAATCACACGCCCAACATCTTTG GAATCTTATCATCAACCAAGTTACGGAATGCCAGTTAATTCTTCCTCTAGATTTGATGAG GCAATGCCATCTAACGGGCCTTCCCTGAGTTCATCGGAGATGGAACGCATGTTAGGTGCT GTTGAACTATTAAGCGAGATGCTGAAAGCAGTGAATCCACATGATCGTGGGGCTGTCAAC GATGAAATTATCACAGAGCTTGTGAAACAATGCCGGTCAGACCAGAAAAAGATAATAAGT TTGGTAACTTCATTAAGAGATGAGGAGCTCTTGGGCCAAGCTCTTGACTTGAATGATAGG ATGCAGATTCTGCTTGGCAAACATGATGCAATTGCATCAGGTTCTCCTCTACCAGATGAA GAAACAGATATCATGAATGAATCATCAGCAGAAACAACTTCAACTCCAGTGGCAACAGGG GCTCCTCGAGCTGCAGTTGCTGCTATAGTACCAACTAATGTTTTCGATGAAGAGGAGGAA GATGAAGATGACGAGTTCTCTCAGCTCGCTCGCAGGAATTCGAAATTCAGGTCTACAAAT GCTGAGAGCACCCCTTCTGGCGTAGCAACATCTTTGTCGACCGCCCATGACGATGAGATA ACAAGTTCAGGATCTTCTGGTACCTCTACAGTTTCACCACCTGTTCAAAGCCATGCATTG GCACTGCCTGATCCTCCAGCTCCTGTTAGAACTGCAGAAGAGCAAGTTATGAGTGACCTT CTTGCACTCACCATATCAAACCCTTCACCACCTCAAACTCCACCAACACCTGAAGCTACC ACCACCATGAACCAAGGTGGCTCGCAAGCCAATGATCATCCACAACCTAGTTACTCAAAC CAAGGACTTGCTGCTGCATCATACAACAGCTATGTTGCTCCTTGGGCTCAGCCTCAATGT CAAACTCCAGGCATTCAGCTTCAGCAGCATCAACAACCATCCCAGTCACAATTGCCCTAC AACTCATCTCCCTACCCGCCACCGCCATGGGCATCGGAGGACACCGCCGAGTCCAACCCT TTCATTGCAGCTTCACTGAAGAACCAACCTACTTCCGCCTCGCCGGTTAATGTACCACTG AATTTGAGGCCTCTACAGCAATCAAATTCTTTCGGGGTTCCGCTTCGAAGTGCCGGGCCA CAATCGCCGATAAACGGGAGCACTAAGCAACCGATGTCTGCAGGAGCTCGCAGGCCATCT TATGTTTCTTCTAACAAATACTTCGATGATCTGTTTGAGAAAAATGCTGATGGCAGCCTG ATGAAGGTGGGCGGTAGCGTTGGTGGGGGCGCATCCTCGCCATACAAGACATAA

Peptide Sequence

PEP ID	Os05t0339000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:15873838:15880419:-1 gene:Os05g0339000 transcript:Os05t0339000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0339000-01)
Sequence	MAAAAVRVDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRLQHKNSKVQFFA LTLLETLMKNCGDHVHSQVVERDILQEMIKIVKKKTDMQLRDKILVLLESWQEAFGGNGG KHPQYYWAYAEMKKLGLEFPRRSPDAAPILTPPITRPTSLESYHQPSYGMPVNSSSRFDE AMPSNGPSLSSSEMERMLGAVELLSEMLKAVNPHDRGAVNDEIITELVKQCRSDQKKIIS LVTSLRDEELLGQALDLNDRMQILLGKHDAIASGSPLPDEETDIMNESSAETTSTPVATG APRAAVAAIVPTNVFDEEEEDEDDEFSQLARRNSKFRSTNAESTPSGVATSLSTAHDDEI TSSGSSGTSTVSPPVQSHALALPDPPAPVRTAEEQVMSDLLALTISNPSPPQTPPTPEAT TTMNQGGSQANDHPQPSYSNQGLAAASYNSYVAPWAQPQCQTPGIQLQQHQQPSQSQLPY NSSPYPPPPWASEDTAESNPFIAASLKNQPTSASPVNVPLNLRPLQQSNSFGVPLRSAGP QSPINGSTKQPMSAGARRPSYVSSNKYFDDLFEKNADGSLMKVGGSVGGGASSPYKT

Transcript Sequence

Transcript ID	Os05t0339000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:15873838:15880419:-1 gene:Os05g0339000 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS domain containing protein. (Os05t0339000-01)
Sequence	ACCTGCTTGTTTGTTCGTCTCTCCCTCCCTCCCTCCCTCCGACTCGCACCGCACCCAGGC CCCAGCCCACGCGGGGTTCGGATTCCCTCCGCCGCCACCCGCGAGAGGGAGACGCCGGCG CCGGCGATCGGTGACCGATGGCGGCGGCGGCGGTGCGGGTAGACAAGGCCACGAGCGAGC TGCTGCTCGGCCCCGACTGGACCCTCAACATCGACATCTGCGACGCCGTCAACTCCGATC ACGGGCAAGCAAAAGAGGTGATTAAAGCTTTGAAGAAGCGTCTCCAGCACAAAAATTCAA AGGTTCAGTTTTTTGCTTTGACGCTATTGGAAACTCTAATGAAGAATTGTGGGGATCATG TGCATTCACAAGTTGTAGAGCGTGATATACTGCAGGAGATGATCAAAATTGTTAAGAAGA AGACTGATATGCAGTTGAGGGACAAAATTCTAGTACTCCTTGAATCTTGGCAAGAAGCAT TTGGTGGGAATGGTGGGAAGCATCCCCAGTACTACTGGGCATATGCTGAAATGAAGAAAT TGGGCTTGGAATTTCCTCGGCGATCACCTGATGCTGCACCAATACTTACTCCTCCAATCA CACGCCCAACATCTTTGGAATCTTATCATCAACCAAGTTACGGAATGCCAGTTAATTCTT CCTCTAGATTTGATGAGGCAATGCCATCTAACGGGCCTTCCCTGAGTTCATCGGAGATGG AACGCATGTTAGGTGCTGTTGAACTATTAAGCGAGATGCTGAAAGCAGTGAATCCACATG ATCGTGGGGCTGTCAACGATGAAATTATCACAGAGCTTGTGAAACAATGCCGGTCAGACC AGAAAAAGATAATAAGTTTGGTAACTTCATTAAGAGATGAGGAGCTCTTGGGCCAAGCTC TTGACTTGAATGATAGGATGCAGATTCTGCTTGGCAAACATGATGCAATTGCATCAGGTT CTCCTCTACCAGATGAAGAAACAGATATCATGAATGAATCATCAGCAGAAACAACTTCAA CTCCAGTGGCAACAGGGGCTCCTCGAGCTGCAGTTGCTGCTATAGTACCAACTAATGTTT TCGATGAAGAGGAGGAAGATGAAGATGACGAGTTCTCTCAGCTCGCTCGCAGGAATTCGA AATTCAGGTCTACAAATGCTGAGAGCACCCCTTCTGGCGTAGCAACATCTTTGTCGACCG CCCATGACGATGAGATAACAAGTTCAGGATCTTCTGGTACCTCTACAGTTTCACCACCTG TTCAAAGCCATGCATTGGCACTGCCTGATCCTCCAGCTCCTGTTAGAACTGCAGAAGAGC AAGTTATGAGTGACCTTCTTGCACTCACCATATCAAACCCTTCACCACCTCAAACTCCAC CAACACCTGAAGCTACCACCACCATGAACCAAGGTGGCTCGCAAGCCAATGATCATCCAC AACCTAGTTACTCAAACCAAGGACTTGCTGCTGCATCATACAACAGCTATGTTGCTCCTT GGGCTCAGCCTCAATGTCAAACTCCAGGCATTCAGCTTCAGCAGCATCAACAACCATCCC AGTCACAATTGCCCTACAACTCATCTCCCTACCCGCCACCGCCATGGGCATCGGAGGACA CCGCCGAGTCCAACCCTTTCATTGCAGCTTCACTGAAGAACCAACCTACTTCCGCCTCGC CGGTTAATGTACCACTGAATTTGAGGCCTCTACAGCAATCAAATTCTTTCGGGGTTCCGC TTCGAAGTGCCGGGCCACAATCGCCGATAAACGGGAGCACTAAGCAACCGATGTCTGCAG GAGCTCGCAGGCCATCTTATGTTTCTTCTAACAAATACTTCGATGATCTGTTTGAGAAAA ATGCTGATGGCAGCCTGATGAAGGTGGGCGGTAGCGTTGGTGGGGGCGCATCCTCGCCAT ACAAGACATAATTCTGAGATTTCTGACACAGGAATATTAAACTGTTGGGAGTAGTCTATC TGCGAACATTACTTTGCTTGTCTTGAGCTCTGATTTGTGGTCAGATTATCTGTGAAGATT TCTCTCGCCATGCCAGATTGATTTGGTTGGTGCTTCTGAAAGGCATGCTGGCCAGTTGAT AAATAATTTATGCCAAAAAACAAGATATATAATGCATCAGTCTCTGTCATGGAGATTTCT TGAATGGT