Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0313700-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:14417745:14419798:-1 gene:Os05g0313700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0313700-01)
Sequence

ATGGCGCCCCGTGGGCGCCGCCTGACGGAGCAGATCCACTCGGAGCACCAGGTGGTCGCC
GCCCTCCTCGACAAGGCGGAGGCCTTGGTAATGGCGGCCCGCGCCAAGGGCGCCCATGGC
GGCGCCGCGGCGGCGGGGGAGCAGCACCCCGATCACCCTAGCCGCGGCAAGAAGAGCGGT
CGTTTCTTGCGCCGCCAGGAGACCCCACCGGAGGCCGCCACCGCGATCGACGGGGATGTC
TCTCCCCCCGAGAAGAGGAGGAAGACGACGGCCGCGAGCCCGATCGTGGAGGTGGAGGTT
GAGGTGATCGAGCCGACCATGCCCAAGGCGCAGAGGGACCGCCTCTACGGCCTCCTCGCC
TCGCTGTCGGCGGACACGCCATTGCCGCCGCACATCGTCGGCCTGATGCGAAGCCAATGC
TGCTGCGTCGTGGACCCTAACGGCGAAGAGATGGATGTCGATCTTAGCTCCGCGAAGGAT
GCTGCCTTGTTCCAGTTGCTGAACCTGCTCGTGGAATTCGCTCAACAGCAGACCACCAAG
ATTATTGAGGAGCAAGAACCGCCCAAGATCGAGGCATCCGACGCCACCAGCAGCTCGTCG
ATCTGCGACCTCCTCGAGGACGGTGAGATAGCCGATGAGGGTGCGGCCATGGGCATGGAC
ATCTGCGGCGGCGTCTCTCCCCTCATCGTGGACAGTGCTCAGCTCTTGCCACTTCCGAAG
CAACAAGAGGATGACGAGTTGATCGACATCTATGGTGGCGTCTCCCCTGTATCAGTCAAC
AACTTCCCTGATTCTCCTCGTTCGAGCAGCAGCAGGAGCGACTCCTCATCATCCTCCAGC
TCTAGCAATGGCTCTGGCTCCTCCTCATCTTCCAGCAGTGGCGCCTCTTCTGGATCATCA
TCCTGCGCCGGTTCATCCTCCTCGTCGTCGGGAAGTGACACCGACGCCGACGCCGACAGT
GCGAGCAACAGGCCAGACACCACCACAGATCATCCCACCGAAGCTGAGGTGAAGCCAATG
GTGGAGCACGAGGTCATGGAGCAAGACAAGAAGCTGACCACTGAGAGGGCAGCAGCATCT
CCTGCATCTCAGCTCTGCATCACGGACATGGGCATAGACATCTGCGGCGGCGTCTCTCCC
CTGGTCGTGGACAAGGCTCAGTTCTCGCCGCTCCCGAAGCAGCAACAGGAGGATGACGAG
TTGATCGACATCTGTGGCGGCATCGACTCCCCTGTATCGGTCAGCAAGTTCCCTGAAACT
CCTCGCTCGAGCAGCAGCGACTCTTCCAGCAGTTCATCTTGCAGCGGTTCATCCTCCTCG
TCGGAAAGAAACGACAGTGCGAGCAGCAGGCCAGACACCACCGCTGATCATCCCACCGAA
GCTGAAGTGAAGCCAATGGAGGAGCAGAAGCTGATCATTGAGAGGGCAGCATCTCCTCAC
ACTGAGATGCAGGAGCTGATCACTGAGAGGGCAGCATCTCCTCACACTGAGATGCAGGAG
CTGATCACTGAGAGGGCAGCATCTCCTCGCACTGAGATGCAGGAGCTGATTGCAAGGGCC
CAGGAGAGGCAGAAACTCCAGCGTGAGCTCGAGAGAGAGGCAGCGCGTGAGCTCGAGAGA
AAGGCGGCGCGTGAGCAGCTGCAGGAGATGAAGAGGACGGCGCAGCCGGTCTTCGACATC
ATCGATCCCAGAGACATGAAGCAGCTGGGGATCTCCGGCGAGGCGCAGTACATTGTCAGC
CCGGTGAAATCTAGGGACAGCCTGCGTCGCCGTGGAGGCGGCCTGCTACAGAGGCTTGGC
TTCTTCCTGAAAGCAGAGTTTTGA

Peptide Sequence

PEP ID

Os05t0313700-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:14417745:14419798:-1 gene:Os05g0313700 transcript:Os05t0313700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0313700-01)
Sequence

MAPRGRRLTEQIHSEHQVVAALLDKAEALVMAARAKGAHGGAAAAGEQHPDHPSRGKKSG
RFLRRQETPPEAATAIDGDVSPPEKRRKTTAASPIVEVEVEVIEPTMPKAQRDRLYGLLA
SLSADTPLPPHIVGLMRSQCCCVVDPNGEEMDVDLSSAKDAALFQLLNLLVEFAQQQTTK
IIEEQEPPKIEASDATSSSSICDLLEDGEIADEGAAMGMDICGGVSPLIVDSAQLLPLPK
QQEDDELIDIYGGVSPVSVNNFPDSPRSSSSRSDSSSSSSSSNGSGSSSSSSSGASSGSS
SCAGSSSSSSGSDTDADADSASNRPDTTTDHPTEAEVKPMVEHEVMEQDKKLTTERAAAS
PASQLCITDMGIDICGGVSPLVVDKAQFSPLPKQQQEDDELIDICGGIDSPVSVSKFPET
PRSSSSDSSSSSSCSGSSSSSERNDSASSRPDTTADHPTEAEVKPMEEQKLIIERAASPH
TEMQELITERAASPHTEMQELITERAASPRTEMQELIARAQERQKLQRELEREAARELER
KAAREQLQEMKRTAQPVFDIIDPRDMKQLGISGEAQYIVSPVKSRDSLRRRGGGLLQRLG
FFLKAEF

Transcript Sequence

Transcript ID

Os05t0313700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:14417745:14419798:-1 gene:Os05g0313700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0313700-01)
Sequence

GTGCGACATGGCGCCCCGTGGGCGCCGCCTGACGGAGCAGATCCACTCGGAGCACCAGGT
GGTCGCCGCCCTCCTCGACAAGGCGGAGGCCTTGGTAATGGCGGCCCGCGCCAAGGGCGC
CCATGGCGGCGCCGCGGCGGCGGGGGAGCAGCACCCCGATCACCCTAGCCGCGGCAAGAA
GAGCGGTCGTTTCTTGCGCCGCCAGGAGACCCCACCGGAGGCCGCCACCGCGATCGACGG
GGATGTCTCTCCCCCCGAGAAGAGGAGGAAGACGACGGCCGCGAGCCCGATCGTGGAGGT
GGAGGTTGAGGTGATCGAGCCGACCATGCCCAAGGCGCAGAGGGACCGCCTCTACGGCCT
CCTCGCCTCGCTGTCGGCGGACACGCCATTGCCGCCGCACATCGTCGGCCTGATGCGAAG
CCAATGCTGCTGCGTCGTGGACCCTAACGGCGAAGAGATGGATGTCGATCTTAGCTCCGC
GAAGGATGCTGCCTTGTTCCAGTTGCTGAACCTGCTCGTGGAATTCGCTCAACAGCAGAC
CACCAAGATTATTGAGGAGCAAGAACCGCCCAAGATCGAGGCATCCGACGCCACCAGCAG
CTCGTCGATCTGCGACCTCCTCGAGGACGGTGAGATAGCCGATGAGGGTGCGGCCATGGG
CATGGACATCTGCGGCGGCGTCTCTCCCCTCATCGTGGACAGTGCTCAGCTCTTGCCACT
TCCGAAGCAACAAGAGGATGACGAGTTGATCGACATCTATGGTGGCGTCTCCCCTGTATC
AGTCAACAACTTCCCTGATTCTCCTCGTTCGAGCAGCAGCAGGAGCGACTCCTCATCATC
CTCCAGCTCTAGCAATGGCTCTGGCTCCTCCTCATCTTCCAGCAGTGGCGCCTCTTCTGG
ATCATCATCCTGCGCCGGTTCATCCTCCTCGTCGTCGGGAAGTGACACCGACGCCGACGC
CGACAGTGCGAGCAACAGGCCAGACACCACCACAGATCATCCCACCGAAGCTGAGGTGAA
GCCAATGGTGGAGCACGAGGTCATGGAGCAAGACAAGAAGCTGACCACTGAGAGGGCAGC
AGCATCTCCTGCATCTCAGCTCTGCATCACGGACATGGGCATAGACATCTGCGGCGGCGT
CTCTCCCCTGGTCGTGGACAAGGCTCAGTTCTCGCCGCTCCCGAAGCAGCAACAGGAGGA
TGACGAGTTGATCGACATCTGTGGCGGCATCGACTCCCCTGTATCGGTCAGCAAGTTCCC
TGAAACTCCTCGCTCGAGCAGCAGCGACTCTTCCAGCAGTTCATCTTGCAGCGGTTCATC
CTCCTCGTCGGAAAGAAACGACAGTGCGAGCAGCAGGCCAGACACCACCGCTGATCATCC
CACCGAAGCTGAAGTGAAGCCAATGGAGGAGCAGAAGCTGATCATTGAGAGGGCAGCATC
TCCTCACACTGAGATGCAGGAGCTGATCACTGAGAGGGCAGCATCTCCTCACACTGAGAT
GCAGGAGCTGATCACTGAGAGGGCAGCATCTCCTCGCACTGAGATGCAGGAGCTGATTGC
AAGGGCCCAGGAGAGGCAGAAACTCCAGCGTGAGCTCGAGAGAGAGGCAGCGCGTGAGCT
CGAGAGAAAGGCGGCGCGTGAGCAGCTGCAGGAGATGAAGAGGACGGCGCAGCCGGTCTT
CGACATCATCGATCCCAGAGACATGAAGCAGCTGGGGATCTCCGGCGAGGCGCAGTACAT
TGTCAGCCCGGTGAAATCTAGGGACAGCCTGCGTCGCCGTGGAGGCGGCCTGCTACAGAG
GCTTGGCTTCTTCCTGAAAGCAGAGTTTTGATGAGCTAGAGCAGAGTAGGAATAGGACCA
TGATCTCGTCTGTTTCTGCTGTCTGTTCGATTCTTTGGTTGCTTGTCAAGCCTGCTTTGA
ACCTTAGAAATCTGTTTAATGTAATTTACTTGAAGCCATTGATTTATTTGCAGCCAACTT
GTGCTGGCAGTAGCCCCATCATATGTATACTGTACATTATTCTGATGATATATGAATGTG
ATATGATTTGTCTT