Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0307200-00
CDS Infomation	cds chromosome:IRGSP-1.0:5:13930297:13932703:-1 gene:Os05g0307200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0307200-00)
Sequence	ATGCCGCCTTCAGCCTTCGCCCAAATCGACGGCGATGCGGCGGCGGCAGCGGCCGAGGCT GAATACCGGTGCACCGGCGCGCGGAGGGGGATTTCGTCGCCAGCGATGGTCCGCATTTCC TCCTCGCCGGCGGCTACTGCCTCCTACCTCGCCTCCAATCTCCTGCCGAAATGCCGCTCC CTCGCCGCCGTCAAGCAGCTCCACGCCCACCTCCTCCACCGCGCCTCCTTCCCTTACAAC CACTTCCTCTCCAAGCTCCTCTCCCTCTTCACCTCCTCCTCCTCCTCCTCCGCCGCCGCC GCCGCCTCCGACTACGCTCTCCTGCTCCTCGCATCCCACTCCGCCCCCACCGCCTTCTCC TACAACGTCGCCATCCGCTTCTTCGCCTCCTCCCGTCCCCACACCTCGCTCCGCCTCTTC CTCCACATGCTTCGCTCCGCGATCCGCCCGGACTCCTACACGCTCCCTTTCCTCCTCCTC GCCGCCGCTCGGTACCCCGCCCCATCACTCGCCCGTGCCGCGCACGCGCTCCTTGGGAAG ATCGGGTTGAATGGCCACGACCACACTGTCCACTCCCTCATCACGATGTACTCCTACCTT GATGACCCTGGTGCCGCACGGAAGGTGTTCGACGGAATTCCCACCCGGGACGTGGTCTCT TGGAACGCTATGATGAAGGCGTATGGGCGGGTGGGGATGAACGGTGAGGTAGGCAGGATG TTCCGGGACATGGTGAAGGAGGGCACGGTGGCGCCCAATGTGGTGACGGTGGCTGTCGTG CTAGCGGCATGCAGGGATCAGGGGGATCTGGTGCTTGGAAGGTGGGTGGAAGAGTGGTCA TGGTCCGCACGGATGGAAATGGACTCTCTTGTTGGCTCGGCACTTTTGGGTATGTATGAG AAGTGTGGAGAGATTGCAGAGGCGCGGCGTGTGTTTGACACCATCATTGACAAGGATATC GTCGCTTGGAACGCCATGATTACTGGATATGCGCAAAATGGCATGTCAAATGAAGCCATT TCCTTGTTCCACAGCATGAGGATAGCAGGCATGCGTCCAGATAAGATAACATTGGCTGGA GTCCTCTCGGCCTGCTCTGCAGTTGGAGCCCTGGAGCTAGGTTCTGAACTGGATGGTTAC GCCTCACGCAGAGGTTTGTACAGCAATGTTTACGTCGGGACAGCCTTAGTGGACATGTAC GCTAAGTGTGGCGATCTTGACAAAGCCATAGAAGTGTTTAGGAAGATGCCATGCAAGAAT GTTGCCTCTTGGAATGCCCTAATTTGCGGTCTTGCCTTTAACGGGCGAGGTGATGAAGCC ATTCAGCATTTTCAATTGATGAGGAACGAGGAGGGGCTCAAACCAGACGATATCACTTTC ATAGGAGTCCTTTCTGCTTGTGTACATGCTGGGTTAGTGAAAGATGGCAAGCGTTGGTTC AATTCCTTGACACCTGAGTTTCAGATTATTCCCAAGATCGAGCACTACTCATGCATGGTT GATCTATTGGCGCGGAGTGGACATTTGGAGGAAGCGTGGGACTTCATCGAGAAGATCCCT GACAAGGTAGATGCAGTGATGTTGGGGGCTTTGCTTGCAGCTTGTCGAAAATGCAAGAAT GTTGAAATTGGTGAGAGGGTCATCAACAGGATCATTCAGCTGGAACCCACAAACTCGTGG AATTATGTGGTGTCATCCAAGATATATGCCAGCTCAGATAGATTGGATGACTCAGCAAAG ATGAGAGGGCTAATGAGGGAAAGAGGTGTCAACAAAACTCCAGGTTGCAGCTGGGTTGAG GTTAGCGGGAAAGTCCTTGAATTCTATGCAGGGGACGAACCACAGCATGGTGCAGATGAT ATGTATCAAGTCCTAGACCTACTGGTTGATGAGATGAGGCTGGAGGGATATGTTCCAAAT CTTGATGTGGTGTAG

Peptide Sequence

PEP ID	Os05t0307200-00
PEP Infomation	pep chromosome:IRGSP-1.0:5:13930297:13932703:-1 gene:Os05g0307200 transcript:Os05t0307200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0307200-00)
Sequence	MPPSAFAQIDGDAAAAAAEAEYRCTGARRGISSPAMVRISSSPAATASYLASNLLPKCRS LAAVKQLHAHLLHRASFPYNHFLSKLLSLFTSSSSSSAAAAASDYALLLLASHSAPTAFS YNVAIRFFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGK IGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRM FRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYE KCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAG VLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKN VASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWF NSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKN VEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVE VSGKVLEFYAGDEPQHGADDMYQVLDLLVDEMRLEGYVPNLDVV

Transcript Sequence

Transcript ID	Os05t0307200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:13930297:13932703:-1 gene:Os05g0307200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0307200-00)
Sequence	ATGCCGCCTTCAGCCTTCGCCCAAATCGACGGCGATGCGGCGGCGGCAGCGGCCGAGGCT GAATACCGGTGCACCGGCGCGCGGAGGGGGATTTCGTCGCCAGCGATGGTCCGCATTTCC TCCTCGCCGGCGGCTACTGCCTCCTACCTCGCCTCCAATCTCCTGCCGAAATGCCGCTCC CTCGCCGCCGTCAAGCAGCTCCACGCCCACCTCCTCCACCGCGCCTCCTTCCCTTACAAC CACTTCCTCTCCAAGCTCCTCTCCCTCTTCACCTCCTCCTCCTCCTCCTCCGCCGCCGCC GCCGCCTCCGACTACGCTCTCCTGCTCCTCGCATCCCACTCCGCCCCCACCGCCTTCTCC TACAACGTCGCCATCCGCTTCTTCGCCTCCTCCCGTCCCCACACCTCGCTCCGCCTCTTC CTCCACATGCTTCGCTCCGCGATCCGCCCGGACTCCTACACGCTCCCTTTCCTCCTCCTC GCCGCCGCTCGGTACCCCGCCCCATCACTCGCCCGTGCCGCGCACGCGCTCCTTGGGAAG ATCGGGTTGAATGGCCACGACCACACTGTCCACTCCCTCATCACGATGTACTCCTACCTT GATGACCCTGGTGCCGCACGGAAGGTGTTCGACGGAATTCCCACCCGGGACGTGGTCTCT TGGAACGCTATGATGAAGGCGTATGGGCGGGTGGGGATGAACGGTGAGGTAGGCAGGATG TTCCGGGACATGGTGAAGGAGGGCACGGTGGCGCCCAATGTGGTGACGGTGGCTGTCGTG CTAGCGGCATGCAGGGATCAGGGGGATCTGGTGCTTGGAAGGTGGGTGGAAGAGTGGTCA TGGTCCGCACGGATGGAAATGGACTCTCTTGTTGGCTCGGCACTTTTGGGTATGTATGAG AAGTGTGGAGAGATTGCAGAGGCGCGGCGTGTGTTTGACACCATCATTGACAAGGATATC GTCGCTTGGAACGCCATGATTACTGGATATGCGCAAAATGGCATGTCAAATGAAGCCATT TCCTTGTTCCACAGCATGAGGATAGCAGGCATGCGTCCAGATAAGATAACATTGGCTGGA GTCCTCTCGGCCTGCTCTGCAGTTGGAGCCCTGGAGCTAGGTTCTGAACTGGATGGTTAC GCCTCACGCAGAGGTTTGTACAGCAATGTTTACGTCGGGACAGCCTTAGTGGACATGTAC GCTAAGTGTGGCGATCTTGACAAAGCCATAGAAGTGTTTAGGAAGATGCCATGCAAGAAT GTTGCCTCTTGGAATGCCCTAATTTGCGGTCTTGCCTTTAACGGGCGAGGTGATGAAGCC ATTCAGCATTTTCAATTGATGAGGAACGAGGAGGGGCTCAAACCAGACGATATCACTTTC ATAGGAGTCCTTTCTGCTTGTGTACATGCTGGGTTAGTGAAAGATGGCAAGCGTTGGTTC AATTCCTTGACACCTGAGTTTCAGATTATTCCCAAGATCGAGCACTACTCATGCATGGTT GATCTATTGGCGCGGAGTGGACATTTGGAGGAAGCGTGGGACTTCATCGAGAAGATCCCT GACAAGGTAGATGCAGTGATGTTGGGGGCTTTGCTTGCAGCTTGTCGAAAATGCAAGAAT GTTGAAATTGGTGAGAGGGTCATCAACAGGATCATTCAGCTGGAACCCACAAACTCGTGG AATTATGTGGTGTCATCCAAGATATATGCCAGCTCAGATAGATTGGATGACTCAGCAAAG ATGAGAGGGCTAATGAGGGAAAGAGGTGTCAACAAAACTCCAGGTTGCAGCTGGGTTGAG GTTAGCGGGAAAGTCCTTGAATTCTATGCAGGGGACGAACCACAGCATGGTGCAGATGAT ATGTATCAAGTCCTAGACCTACTGGTTGATGAGATGAGGCTGGAGGGATATGTTCCAAAT CTTGATGTGGTGTAGCCCATAAACAGAAGCAATTACTTTTAGCTGCTGAAATGTTACTGA ATTTGTTTCTGGATTGGTGTTTATGTCTCTGAGGCTGTTACTATGTGGATATGTGATACA GGGAACCAGTTTTTCCCCCTCACAGCAGCAGAAGCAAAGTCTAAACAGAACTAATGGATG TCTGAGATGGAACATTGCTAACAAAGCATTTCCAATCATTCAATATGACCAGATATCTGG ACTAATCCAGTGCATTATGCTAACTGAATCAGCATATCTGCGCTCTACCACGCTCTTCAA ATTATGGCATGGTAGGTGCTTCAGTGGCTTGAGCTTGGGATCCATGAACTTATTTGACAG AGTATTAGCCACCCTAGAAACTTTCAGCAGA