Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0305100-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:13772401:13781908:1 gene:Os05g0305100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2. (Os05t0305100-01)
Sequence	ATGTATTGTTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTAC ACATGTTGTGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACT TTCCAAAAGGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAG AGTGGTAATTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAG ATTGTCAGCAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTAT TATACACTAGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCT GCTTGCCTTTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCG GACCATTTGCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTT TTGCTACTTGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACAT CGTTTTACAGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGC ATTGTAGCTAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGT GGTGCAGCACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATT GTTGCTGTTGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAAT ACAGATTCGGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTT GTTACTAAAATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAG CATTTTGCTCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGA CTGGAGGGTGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCT GCTAAAAATGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAG GCACGCGAATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGAT AAGCATTCGACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCT GAAGGGGAAGGTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGAT GATGCGGAGGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATC TGGGAGGAAATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCT GAGCTGGCAGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAAT GAAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTG AAGCGGAAGAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACC AAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGAC ACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGC TATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAA

Peptide Sequence

PEP ID	Os05t0305100-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:13772401:13781908:1 gene:Os05g0305100 transcript:Os05t0305100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2. (Os05t0305100-01)
Sequence	MYCSHCQDNCPVVKDPDKNYTCCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILSSIE SGNSVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAA ACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLLLAEHPVIQKLIDPSLFIH RFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYDYTKADI VAVVHVCEATLTKRLIEFENTDSGSLTIEEFLAKADEQVLVTKISPKSGEVLCKHKDKAE HFAHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCE ARESDVENNITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDID DAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAAELAARGVVVEEGKRKRRRHN EDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYNTKDEDGKADKEMDFNDEYGQD TGDGETFEGGYDYPDYNYDGYGDGAYGDYDGVDF

Transcript Sequence

Transcript ID	Os05t0305100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:13772401:13781908:1 gene:Os05g0305100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2. (Os05t0305100-01)
Sequence	AAAGCCGCCGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAG GGTTTACCACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGA GCTCTCCTCAACTGCGCCGCCGAGAGCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACA GGCTGATCTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTG TTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTG TGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAA GGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAA TTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAG CAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACT AGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCT TTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTT GCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACT TGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTAC AGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGC TAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGC ACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGT TGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTC GGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAA AATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGC TCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGG TGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAA TGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGA ATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTC GACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGA AGGTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGA GGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGA AATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGC AGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGG CAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAA GAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGA AGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGA TGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGA TGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGT AGAATTGTTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAG TTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAG CTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTC AGCGACCTATACTTGCAAGTTGTATATTAAAACAGGCCTCGAAGAAAAAGGAAAATTTTG AATGCC