Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0297400-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:13260921:13261985:-1 gene:Os05g0297400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CXIP4. (Os05t0297400-00)
Sequence

ATGCCGGCCACCGCGGGGCGCGTGCGCATGCCCGCCAACAACCGCGTCCACAGCAGCGCG
GCGTTGCAGACGCACTGCATCTGGCAGAGCGCCATCGGCTACGACCCCTACGCCCCGGCG
GAGAGAAGCAAGCACCAGGCTCCCTCATCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCA
TCAGCCCCCTCCGAAAACACCTACACTAGCTACCAGAGCCTCCTCACGATCATCCGCGCC
ACCGGCTCCACCTCCGACGAGACCCGCGGCGGCTGCCGGAAGTGCGGCCGCGTCGGCCAC
CTCACCTTCCAGTGCCGCAACTTCCTCTGCGTCAAGGACCTCGATATGGACGACGACGTC
GAGGCCGGTATTCGTCAGGCCGCCTCATCGCAGGCCAAGCTCGACGAGTTCAGGAAGAAG
ACCTCTGGTGGTAGCAGCGATGCTGAGGAGGGCTCCGCTGAGGATGATGAAGAAGACAGC
TATGATTCCTCCGATTCTGACATTGATCCTGAGCTTGAGAGAATAATCGCTAAGCGGGAG
CTCCACAAGGATGGCAGTAAGCAATCGAGGGAGGAAGAGAAGAAAGAGAAGAAGACAAGC
CGCCAAAGGAGGAGCAGCAGGGGAAGGTCGAAGCACAGGAGAAGCAGCAGCAAAGAAGAC
AAGAAGAAGAGTAGACGCAAGAGGCGTGAAAGATCATGTGAGGAGGATAGCGAGACTGAT
TCAGACAAGAAGATCAAGAGGAGGCATCATAGGAAGAGCAGCAAGGAGGAGAGGGAGAGG
GGTAGGAGCCGCCACCGCCGCAGGAGCTACGACGACGACTCATCGGATGACGATCACCAC
ACGCTGCGGCGGCGCCGCCGCCGCCGCAGAAAGGATGCATTCGATCGGCAGTGA

Peptide Sequence

PEP ID

Os05t0297400-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:13260921:13261985:-1 gene:Os05g0297400 transcript:Os05t0297400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CXIP4. (Os05t0297400-00)
Sequence

MPATAGRVRMPANNRVHSSAALQTHCIWQSAIGYDPYAPAERSKHQAPSSSSVSAAAAAA
SAPSENTYTSYQSLLTIIRATGSTSDETRGGCRKCGRVGHLTFQCRNFLCVKDLDMDDDV
EAGIRQAASSQAKLDEFRKKTSGGSSDAEEGSAEDDEEDSYDSSDSDIDPELERIIAKRE
LHKDGSKQSREEEKKEKKTSRQRRSSRGRSKHRRSSSKEDKKKSRRKRRERSCEEDSETD
SDKKIKRRHHRKSSKEERERGRSRHRRRSYDDDSSDDDHHTLRRRRRRRRKDAFDRQ

Transcript Sequence

Transcript ID

Os05t0297400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:13260921:13261985:-1 gene:Os05g0297400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CXIP4. (Os05t0297400-00)
Sequence

CCCGATCCCAATTCCCCCGTCGCCCTCCACGAAACCCTACCCCTAAACCGATCACCCCTT
CCCCGGCGGACGCAACCGGCGGCCGGCGAGAGCGAAGATGCCGGCCACCGCGGGGCGCGT
GCGCATGCCCGCCAACAACCGCGTCCACAGCAGCGCGGCGTTGCAGACGCACTGCATCTG
GCAGAGCGCCATCGGCTACGACCCCTACGCCCCGGCGGAGAGAAGCAAGCACCAGGCTCC
CTCATCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCATCAGCCCCCTCCGAAAACACCTA
CACTAGCTACCAGAGCCTCCTCACGATCATCCGCGCCACCGGCTCCACCTCCGACGAGAC
CCGCGGCGGCTGCCGGAAGTGCGGCCGCGTCGGCCACCTCACCTTCCAGTGCCGCAACTT
CCTCTGCGTCAAGGACCTCGATATGGACGACGACGTCGAGGCCGGTATTCGTCAGGCCGC
CTCATCGCAGGCCAAGCTCGACGAGTTCAGGAAGAAGACCTCTGGTGGTAGCAGCGATGC
TGAGGAGGGCTCCGCTGAGGATGATGAAGAAGACAGCTATGATTCCTCCGATTCTGACAT
TGATCCTGAGCTTGAGAGAATAATCGCTAAGCGGGAGCTCCACAAGGATGGCAGTAAGCA
ATCGAGGGAGGAAGAGAAGAAAGAGAAGAAGACAAGCCGCCAAAGGAGGAGCAGCAGGGG
AAGGTCGAAGCACAGGAGAAGCAGCAGCAAAGAAGACAAGAAGAAGAGTAGACGCAAGAG
GCGTGAAAGATCATGTGAGGAGGATAGCGAGACTGATTCAGACAAGAAGATCAAGAGGAG
GCATCATAGGAAGAGCAGCAAGGAGGAGAGGGAGAGGGGTAGGAGCCGCCACCGCCGCAG
GAGCTACGACGACGACTCATCGGATGACGATCACCACACGCTGCGGCGGCGCCGCCGCCG
CCGCAGAAAGGATGCATTCGATCGGCAGTGATTCTGGAAGTGGTGGTCGTGACCCTGCTG
AATCTCATATGGGTGGCAAAGCGGCGCAAGGAGGAGCAGGAGATC